Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46950 * 2 1 4 4 C 1.52998 * 109.47098 * 120.00286 * 2 1 3 5 5 N 1.46493 * 109.47183 * 64.99936 * 4 2 1 6 6 C 1.36935 * 120.00093 * 269.99753 * 5 4 2 7 7 H 1.08007 * 120.00108 * 139.32291 * 6 5 4 8 8 C 1.38815 * 120.00304 * 319.32210 * 6 5 4 9 9 N 1.31618 * 119.99488 * 342.55335 * 8 6 5 10 10 Si 1.86790 * 120.00334 * 162.55297 * 8 6 5 11 11 H 1.48510 * 109.47233 * 90.00049 * 10 8 6 12 12 H 1.48498 * 109.47221 * 209.99724 * 10 8 6 13 13 H 1.48500 * 109.47423 * 330.00063 * 10 8 6 14 14 C 1.46499 * 120.00046 * 90.00031 * 5 4 2 15 15 C 1.53042 * 113.15381 * 234.44427 * 14 5 4 16 16 S 1.81432 * 89.93383 * 277.62212 * 15 14 5 17 17 C 1.53047 * 113.15146 * 134.07084 * 14 5 4 18 18 H 1.09005 * 109.46585 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46986 * 299.99809 * 1 2 3 20 20 H 1.08998 * 109.47063 * 60.00250 * 1 2 3 21 21 H 1.08998 * 109.46986 * 240.00191 * 2 1 3 22 22 H 1.09001 * 109.46961 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47034 * 299.99768 * 3 2 1 24 24 H 1.08998 * 109.47120 * 60.00273 * 3 2 1 25 25 H 1.08994 * 109.46857 * 304.99736 * 4 2 1 26 26 H 1.09002 * 109.47002 * 184.99604 * 4 2 1 27 27 H 0.97001 * 119.99775 * 175.40027 * 9 8 6 28 28 H 1.08997 * 112.53003 * 4.25829 * 14 5 4 29 29 H 1.09000 * 113.14845 * 32.89843 * 15 14 5 30 30 H 1.08997 * 113.15343 * 162.34596 * 15 14 5 31 31 H 1.09003 * 113.14811 * 197.61238 * 17 14 5 32 32 H 1.08996 * 113.15264 * 327.05712 * 17 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.4581 -2.5377 1.7239 7 1 -0.1450 -3.2683 1.2053 8 6 0.0223 -2.0091 2.9313 9 7 0.8740 -1.3992 3.7282 10 14 -1.7726 -2.1631 3.4249 11 1 -1.9696 -3.4211 4.1892 12 1 -2.1543 -1.0046 4.2717 13 1 -2.6209 -2.1864 2.2062 14 6 2.5428 -3.1113 0.5611 15 6 1.8596 -3.9256 -0.5400 16 16 1.1628 -5.0347 0.7155 17 6 2.7181 -4.3859 1.3900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 1.6055 -0.2618 2.1369 26 1 3.1264 -0.6444 1.2951 27 1 0.5582 -0.9718 4.5396 28 1 3.4890 -2.6723 0.2449 29 1 1.1007 -3.3614 -1.0819 30 1 2.5651 -4.4222 -1.2062 31 1 3.5891 -4.9717 1.0961 32 1 2.6789 -4.2071 2.4644 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261111332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = 22.831399 kcal Electronic energy + Delta-G solvation = -13535.978909 eV Core-core repulsion = 11430.545663 eV Total energy + Delta-G solvation = -2105.433246 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.07299 -36.26459 -34.27041 -31.51877 -27.92551 -27.25298 -26.84946 -24.80919 -21.65327 -20.69082 -18.29074 -17.42278 -16.78879 -16.08138 -15.83466 -14.97056 -14.82077 -14.21021 -13.89091 -13.71577 -13.52005 -13.16377 -12.92678 -12.77028 -12.70984 -12.46389 -12.16079 -11.93267 -11.57084 -11.51189 -11.33783 -11.16393 -10.62299 -10.35164 -8.59574 -7.96565 -7.54541 -5.29257 1.30342 1.35959 1.43231 1.48051 1.54027 2.59017 3.40327 3.53899 3.97842 4.31713 4.43613 4.47599 4.52141 4.59875 4.63294 4.81290 4.93210 4.95572 5.07617 5.07965 5.11318 5.24252 5.39267 5.52668 5.57324 5.82683 5.98176 6.05429 6.71372 7.36218 7.97970 8.48466 9.29152 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.020280 B = 0.018022 C = 0.011568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.341858 B = 1553.295535 C = 2419.992354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.153 3.847 5 N -0.570 5.570 6 C -0.210 4.210 7 H 0.078 0.922 8 C -0.034 4.034 9 N -0.924 5.924 10 Si 0.924 3.076 11 H -0.298 1.298 12 H -0.297 1.297 13 H -0.274 1.274 14 C 0.163 3.837 15 C -0.072 4.072 16 S -0.368 6.368 17 C -0.073 4.073 18 H 0.048 0.952 19 H 0.023 0.977 20 H 0.048 0.952 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.061 0.939 26 H 0.031 0.969 27 H 0.241 0.759 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 0.914 -9.008 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.124 4.124 3 C -0.193 4.193 4 C 0.027 3.973 5 N -0.287 5.287 6 C -0.342 4.342 7 H 0.095 0.905 8 C -0.230 4.230 9 N -0.570 5.570 10 Si 0.754 3.246 11 H -0.226 1.226 12 H -0.223 1.223 13 H -0.199 1.199 14 C 0.052 3.948 15 C -0.223 4.223 16 S -0.143 6.143 17 C -0.224 4.224 18 H 0.067 0.933 19 H 0.042 0.958 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.898 0.083 -8.524 9.373 hybrid contribution -0.438 0.410 0.763 0.971 sum 3.461 0.493 -7.761 8.512 Atomic orbital electron populations 1.21597 0.96458 1.01175 0.98859 1.21568 0.95598 0.95982 0.99293 1.21716 1.00888 0.95632 1.01069 1.20986 0.95681 0.83612 0.96975 1.43890 1.18025 1.01944 1.64826 1.19564 0.95178 1.20641 0.98772 0.90506 1.25560 0.99110 1.02583 0.95702 1.70118 1.32930 1.41328 1.12663 0.85954 0.84689 0.76138 0.77784 1.22591 1.22314 1.19935 1.21194 0.94016 0.89375 0.90222 1.25060 1.01151 0.96490 0.99593 1.88746 1.35232 1.64827 1.25534 1.24927 0.93823 0.99701 1.03936 0.93339 0.95821 0.93275 0.91978 0.92178 0.91998 0.94234 0.92092 0.95056 0.94916 0.87287 0.90212 0.85769 0.86070 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 8.75 71.98 0.63 -4.07 16 2 C -0.10 -3.64 3.13 -10.79 -0.03 -3.68 16 3 C -0.14 -3.94 9.19 71.98 0.66 -3.27 16 4 C 0.15 6.46 4.80 86.38 0.41 6.88 16 5 N -0.57 -25.24 2.50 -715.01 -1.78 -27.03 16 6 C -0.21 -10.70 5.48 84.03 0.46 -10.24 16 7 H 0.08 4.09 5.64 -9.89 -0.06 4.04 16 8 C -0.03 -1.87 5.03 84.86 0.43 -1.44 16 9 N -0.92 -52.97 11.44 21.65 0.25 -52.72 16 10 Si 0.92 45.94 29.59 68.60 2.03 47.97 16 11 H -0.30 -15.17 7.11 99.48 0.71 -14.47 16 12 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 13 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 14 C 0.16 5.83 4.44 45.02 0.20 6.03 16 15 C -0.07 -2.34 7.53 72.00 0.54 -1.80 16 16 S -0.37 -14.93 21.23 -56.49 -1.20 -16.13 16 17 C -0.07 -2.69 7.41 72.00 0.53 -2.16 16 18 H 0.05 2.08 6.35 -2.38 -0.02 2.07 16 19 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 3.10 5.59 -2.39 -0.01 3.09 16 26 H 0.03 1.24 7.97 -2.39 -0.02 1.22 16 27 H 0.24 13.76 8.32 -92.71 -0.77 12.99 16 28 H 0.11 3.25 7.96 -2.39 -0.02 3.23 16 29 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -59.66 265.09 4.16 -55.49 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.03 Total: 6.16 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.84 Total: -13.75 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.54 Total: -79.75 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: -14.93 SS G_CDS: -1.20 Total: -16.13 kcal Total: -59.66 4.16 -55.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.326 kcal (2) G-P(sol) polarization free energy of solvation -59.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds