Wall clock time and date at job start Mon Mar 30 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.38780 * 2 1 4 4 S 1.83393 * 110.33982 * 237.76589 * 2 1 3 5 5 C 1.83987 * 95.85139 * 221.37856 * 4 2 1 6 6 C 1.55144 * 100.91123 * 35.35264 * 5 4 2 7 7 C 1.52941 * 108.96184 * 318.55948 * 6 5 4 8 8 C 1.50698 * 108.88954 * 269.30640 * 7 6 5 9 9 H 1.07998 * 120.00051 * 117.65741 * 8 7 6 10 10 C 1.37873 * 120.00035 * 297.65345 * 8 7 6 11 11 N 1.31516 * 119.99950 * 352.11103 * 10 8 7 12 12 Si 1.86796 * 120.00318 * 172.11242 * 10 8 7 13 13 H 1.48497 * 109.47352 * 59.99699 * 12 10 8 14 14 H 1.48501 * 109.47654 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47006 * 300.00009 * 12 10 8 16 16 N 1.46906 * 108.88947 * 150.89198 * 7 6 5 17 17 C 1.46902 * 110.99750 * 169.85586 * 16 7 6 18 18 C 1.46901 * 110.99803 * 293.80916 * 16 7 6 19 19 H 1.09005 * 109.47099 * 275.97712 * 1 2 3 20 20 H 1.08999 * 109.47018 * 35.97384 * 1 2 3 21 21 H 1.08995 * 109.47376 * 155.97585 * 1 2 3 22 22 H 1.08999 * 111.13234 * 277.44149 * 5 4 2 23 23 H 1.09004 * 111.16588 * 153.28127 * 5 4 2 24 24 H 1.09001 * 109.60590 * 198.62881 * 6 5 4 25 25 H 1.08999 * 109.45495 * 78.39550 * 6 5 4 26 26 H 0.96998 * 120.00433 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.47425 * 35.02528 * 17 16 7 28 28 H 1.09001 * 109.46893 * 155.03008 * 17 16 7 29 29 H 1.09001 * 109.46920 * 275.01935 * 17 16 7 30 30 H 1.08998 * 109.46997 * 141.42729 * 18 16 7 31 31 H 1.09006 * 109.46902 * 261.42211 * 18 16 7 32 32 H 1.08997 * 109.47415 * 21.42109 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 16 2.1675 -0.9172 -1.4546 5 6 3.5204 -1.7798 -0.5542 6 6 2.8495 -2.0200 0.8239 7 6 2.0644 -0.7685 1.2193 8 6 2.9652 0.1420 2.0134 9 1 3.2044 1.1261 1.6384 10 6 3.4839 -0.2814 3.2186 11 7 3.0731 -1.4118 3.7505 12 14 4.7701 0.7506 4.0961 13 1 4.2071 2.0909 4.3988 14 1 5.1631 0.0808 5.3618 15 1 5.9633 0.9003 3.2247 16 7 0.9309 -1.1657 2.0652 17 6 0.2868 0.0091 2.6678 18 6 -0.0386 -1.9655 1.3047 19 1 -0.3633 0.1070 1.0221 20 1 -0.3633 0.8317 -0.6037 21 1 -0.3634 -0.9386 -0.4184 22 1 4.3982 -1.1407 -0.4579 23 1 3.7754 -2.7233 -1.0370 24 1 3.6150 -2.2233 1.5728 25 1 2.1712 -2.8703 0.7541 26 1 3.4383 -1.7099 4.5983 27 1 0.3204 0.8421 1.9657 28 1 -0.7512 -0.2264 2.9029 29 1 0.8132 0.2830 3.5821 30 1 -0.4277 -2.7630 1.9376 31 1 -0.8599 -1.3272 0.9785 32 1 0.4522 -2.3996 0.4336 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261117011.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:34 Heat of formation + Delta-G solvation = 62.686957 kcal Electronic energy + Delta-G solvation = -14024.276705 eV Core-core repulsion = 11920.571726 eV Total energy + Delta-G solvation = -2103.704979 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76337 -35.07380 -33.64074 -31.74719 -29.46290 -28.02455 -25.94899 -23.89497 -22.81045 -20.42357 -18.37133 -17.13774 -16.79841 -16.39556 -15.86956 -15.41389 -15.09314 -14.70699 -14.06221 -13.54524 -13.39439 -12.88930 -12.80307 -12.70990 -12.39664 -12.34208 -12.07837 -11.82727 -11.59032 -11.47493 -11.33229 -10.92731 -10.48342 -10.33259 -8.70288 -8.26164 -7.87273 -6.11688 1.13404 1.43560 1.47334 1.50930 1.55799 2.48886 3.23532 3.67423 4.04062 4.22200 4.28467 4.40745 4.49252 4.59529 4.64990 4.75113 4.80366 4.92634 4.94308 5.05961 5.15960 5.18855 5.26694 5.34903 5.56171 5.75063 5.87125 6.24194 6.64803 6.95651 7.18129 7.57405 9.06706 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.014865 C = 0.012524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.469013 B = 1883.160652 C = 2235.150649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.043 4.043 3 H 0.067 0.933 4 S -0.349 6.349 5 C -0.048 4.048 6 C -0.086 4.086 7 C 0.238 3.762 8 C -0.543 4.543 9 H 0.041 0.959 10 C 0.054 3.946 11 N -0.850 5.850 12 Si 0.925 3.075 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.278 1.278 16 N -0.513 5.513 17 C 0.053 3.947 18 C -0.005 4.005 19 H 0.112 0.888 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.112 0.888 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.253 0.747 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 0.023 -4.422 5.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.173 4.173 3 H 0.085 0.915 4 S -0.123 6.123 5 C -0.197 4.197 6 C -0.126 4.126 7 C 0.148 3.852 8 C -0.582 4.582 9 H 0.059 0.941 10 C -0.152 4.152 11 N -0.484 5.484 12 Si 0.752 3.248 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.204 1.204 16 N -0.236 5.236 17 C -0.095 4.095 18 C -0.152 4.152 19 H 0.130 0.870 20 H 0.069 0.931 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.130 0.870 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.688 -0.451 -5.034 6.257 hybrid contribution 1.065 1.157 1.160 1.954 sum -2.623 0.706 -3.874 4.732 Atomic orbital electron populations 1.23516 0.92650 1.02516 1.05213 1.24523 0.98992 1.00214 0.93612 0.91456 1.87082 1.42509 1.59869 1.22882 1.24280 0.96827 1.01705 0.96849 1.22115 0.99070 0.97875 0.93495 1.19214 0.88593 0.90635 0.86712 1.21090 1.30519 1.00730 1.05878 0.94079 1.25342 0.96806 0.95726 0.97327 1.70293 1.39823 1.21315 1.16989 0.86163 0.80942 0.79527 0.78126 1.20447 1.21350 1.20353 1.62257 1.07265 1.20813 1.33250 1.22068 0.96260 0.92597 0.98532 1.23423 0.96328 0.98231 0.97233 0.87049 0.93105 0.90183 0.90176 0.87021 0.91542 0.93227 0.93733 0.94713 0.92408 0.94591 0.94421 0.91686 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.26 6.70 71.98 0.48 -5.78 16 2 C -0.04 -1.74 2.81 30.84 0.09 -1.65 16 3 H 0.07 2.94 7.30 -2.39 -0.02 2.92 16 4 S -0.35 -13.42 22.31 -56.49 -1.26 -14.68 16 5 C -0.05 -1.84 7.52 72.72 0.55 -1.29 16 6 C -0.09 -3.78 4.84 31.31 0.15 -3.63 16 7 C 0.24 10.70 0.15 3.00 0.00 10.70 16 8 C -0.54 -27.42 6.68 25.60 0.17 -27.25 16 9 H 0.04 2.14 7.28 -2.91 -0.02 2.12 16 10 C 0.05 2.75 4.33 84.65 0.37 3.11 16 11 N -0.85 -45.04 11.25 21.45 0.24 -44.79 16 12 Si 0.93 41.36 29.54 68.60 2.03 43.39 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 N -0.51 -22.45 3.63 -910.78 -3.31 -25.76 16 17 C 0.05 2.16 7.37 127.69 0.94 3.10 16 18 C 0.00 -0.17 7.38 127.69 0.94 0.77 16 19 H 0.11 3.83 2.20 -5.59 -0.01 3.82 16 20 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.08 2.65 5.41 -2.39 -0.01 2.64 16 22 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 23 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 24 H 0.07 3.30 6.39 -2.39 -0.02 3.29 16 25 H 0.05 2.16 6.16 -2.39 -0.01 2.14 16 26 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 27 H 0.03 1.38 5.30 -2.39 -0.01 1.37 16 28 H 0.06 2.01 7.68 -2.39 -0.02 1.99 16 29 H 0.04 1.67 7.52 -2.39 -0.02 1.65 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 2.10 4.43 -2.38 -0.01 2.08 16 32 H 0.05 2.09 5.16 -2.39 -0.01 2.07 16 Total: -1.00 -53.67 241.53 2.50 -51.17 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.11 Total: 12.58 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.69 Total: -21.91 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -3.07 Total: -70.55 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: -13.42 SS G_CDS: -1.26 Total: -14.68 kcal Total: -53.67 2.50 -51.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117011.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.860 kcal (2) G-P(sol) polarization free energy of solvation -53.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds