Wall clock time and date at job start Mon Mar 30 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47463 * 2 1 4 4 N 1.46904 * 109.47301 * 120.00496 * 2 1 3 5 5 C 1.46897 * 111.00276 * 122.03072 * 4 2 1 6 6 C 1.50698 * 108.84915 * 303.32522 * 5 4 2 7 7 H 1.07998 * 120.00018 * 121.37860 * 6 5 4 8 8 C 1.37884 * 120.00461 * 301.38362 * 6 5 4 9 9 N 1.31512 * 119.99368 * 353.60970 * 8 6 5 10 10 Si 1.86794 * 120.00284 * 173.61475 * 8 6 5 11 11 H 1.48492 * 109.47268 * 269.99871 * 10 8 6 12 12 H 1.48503 * 109.47218 * 149.99606 * 10 8 6 13 13 H 1.48505 * 109.47049 * 29.99823 * 10 8 6 14 14 C 1.52942 * 108.77580 * 61.83996 * 5 4 2 15 15 C 1.55149 * 108.95675 * 90.62108 * 14 5 4 16 16 S 1.83981 * 100.91537 * 41.43794 * 15 14 5 17 17 C 1.53709 * 108.88824 * 184.75479 * 5 4 2 18 18 H 1.08997 * 109.47161 * 177.54154 * 1 2 3 19 19 H 1.09003 * 109.47016 * 297.53686 * 1 2 3 20 20 H 1.08997 * 109.47209 * 57.53922 * 1 2 3 21 21 H 1.09001 * 109.47165 * 239.99835 * 2 1 3 22 22 H 1.09002 * 109.47482 * 179.97438 * 3 2 1 23 23 H 1.08995 * 109.47310 * 300.00485 * 3 2 1 24 24 H 1.08999 * 109.46833 * 60.00270 * 3 2 1 25 25 H 1.00902 * 110.99907 * 358.07240 * 4 2 1 26 26 H 0.96999 * 120.00747 * 354.65308 * 9 8 6 27 27 H 1.09003 * 109.59872 * 210.54649 * 14 5 4 28 28 H 1.08992 * 109.60162 * 330.68766 * 14 5 4 29 29 H 1.09000 * 111.13082 * 283.51931 * 15 14 5 30 30 H 1.09007 * 111.16305 * 159.36912 * 15 14 5 31 31 H 1.08998 * 110.33819 * 1.04042 * 17 5 4 32 32 H 1.08999 * 110.34505 * 123.19421 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.8810 -1.8264 0.8379 6 6 2.1105 -2.7544 -0.0656 7 1 2.4837 -2.9789 -1.0539 8 6 0.9291 -3.3167 0.3693 9 7 0.5382 -3.1453 1.6133 10 14 -0.1160 -4.3219 -0.8081 11 1 -1.0830 -3.4299 -1.4967 12 1 -0.8559 -5.3619 -0.0489 13 1 0.7601 -4.9733 -1.8149 14 6 4.0997 -1.2969 0.0807 15 6 5.2311 -0.9914 1.0974 16 16 5.0933 -2.4434 2.2188 17 6 3.2676 -2.5853 2.1174 18 1 -0.3633 -1.0267 -0.0441 19 1 -0.3633 0.4751 0.9113 20 1 -0.3633 0.5515 -0.8671 21 1 1.8933 -0.5139 -0.8900 22 1 3.1301 1.4424 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6768 1.9562 0.8900 25 1 1.2526 -0.9926 1.7822 26 1 1.1165 -2.6901 2.2452 27 1 4.4416 -2.0473 -0.6323 28 1 3.8312 -0.3851 -0.4526 29 1 5.0379 -0.0617 1.6327 30 1 6.2043 -0.9645 0.6070 31 1 2.8027 -2.1222 2.9877 32 1 2.9710 -3.6314 2.0418 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261119507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:06 Heat of formation + Delta-G solvation = -6.247174 kcal Electronic energy + Delta-G solvation = -13731.024548 eV Core-core repulsion = 11624.330360 eV Total energy + Delta-G solvation = -2106.694188 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.10850 -33.78616 -32.39116 -29.29125 -27.02423 -26.42193 -25.69635 -22.76952 -19.99234 -18.75080 -17.44122 -15.86376 -14.80628 -14.31921 -13.94973 -13.83546 -13.00938 -12.78713 -12.40621 -12.32418 -12.09377 -11.53518 -11.27164 -11.13692 -10.93023 -10.69088 -10.39375 -10.31232 -10.20296 -10.02925 -9.87444 -9.40302 -9.09874 -8.47960 -7.19208 -6.95482 -6.45154 -4.32900 2.72666 3.19557 3.31584 3.34880 3.50201 4.35247 5.04358 5.32985 5.61783 5.63182 5.75318 5.92796 6.00580 6.15751 6.21679 6.23623 6.27032 6.43411 6.45269 6.54901 6.58006 6.74450 6.93080 6.99616 7.05860 7.19719 7.82107 8.08069 8.40901 8.58071 8.65415 9.36333 10.78312 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.015661 C = 0.011270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.410656 B = 1787.507635 C = 2483.821768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.091 3.909 3 C -0.136 4.136 4 N -0.688 5.688 5 C 0.212 3.788 6 C -0.610 4.610 7 H 0.052 0.948 8 C 0.032 3.968 9 N -0.907 5.907 10 Si 1.061 2.939 11 H -0.286 1.286 12 H -0.284 1.284 13 H -0.288 1.288 14 C -0.099 4.099 15 C -0.055 4.055 16 S -0.356 6.356 17 C -0.024 4.024 18 H 0.068 0.932 19 H 0.043 0.957 20 H 0.041 0.959 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.342 0.658 26 H 0.274 0.726 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 5.057 -2.647 6.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 C -0.195 4.195 4 N -0.322 5.322 5 C 0.122 3.878 6 C -0.650 4.650 7 H 0.071 0.929 8 C -0.173 4.173 9 N -0.546 5.546 10 Si 0.889 3.111 11 H -0.213 1.213 12 H -0.209 1.209 13 H -0.214 1.214 14 C -0.138 4.138 15 C -0.203 4.203 16 S -0.131 6.131 17 C -0.173 4.173 18 H 0.087 0.913 19 H 0.063 0.937 20 H 0.060 0.940 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.162 0.838 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.344 4.029 -2.044 5.090 hybrid contribution -0.103 0.756 -0.740 1.063 sum 2.240 4.785 -2.784 5.973 Atomic orbital electron populations 1.22191 0.97112 1.02575 0.99903 1.21207 0.92795 0.93080 0.94881 1.21914 1.00487 0.97236 0.99831 1.61212 1.24332 1.28846 1.17819 1.19171 0.90949 0.87676 0.90043 1.22548 1.09671 1.30710 1.02100 0.92946 1.25701 0.96576 0.96306 0.98710 1.70889 1.39563 1.40738 1.03447 0.83653 0.75859 0.76613 0.74966 1.21278 1.20932 1.21383 1.22403 0.93221 1.00851 0.97336 1.24186 1.01497 0.96885 0.97715 1.87263 1.16193 1.43220 1.66452 1.24423 0.87396 1.04520 1.00971 0.91328 0.93742 0.93963 0.91144 0.93316 0.94078 0.93481 0.83785 0.91107 0.91583 0.90954 0.89960 0.89614 0.91051 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 9.00 37.16 0.33 -2.76 16 2 C 0.09 1.79 1.99 -67.71 -0.13 1.66 16 3 C -0.14 -2.28 9.33 37.16 0.35 -1.93 16 4 N -0.69 -14.81 5.83 -93.87 -0.55 -15.36 16 5 C 0.21 4.77 0.59 -132.42 -0.08 4.69 16 6 C -0.61 -15.25 6.15 -34.44 -0.21 -15.46 16 7 H 0.05 1.36 7.52 -52.49 -0.39 0.96 16 8 C 0.03 0.83 3.96 -17.82 -0.07 0.75 16 9 N -0.91 -24.02 12.51 55.43 0.69 -23.33 16 10 Si 1.06 23.56 29.91 -169.99 -5.08 18.47 16 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 14 C -0.10 -1.99 5.06 -25.62 -0.13 -2.12 16 15 C -0.05 -1.00 7.52 38.29 0.29 -0.71 16 16 S -0.36 -7.44 23.23 -107.50 -2.50 -9.94 16 17 C -0.02 -0.56 4.91 37.53 0.18 -0.38 16 18 H 0.07 1.52 7.08 -51.93 -0.37 1.15 16 19 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 1.52 5.84 -51.93 -0.30 1.21 16 22 H 0.05 0.80 7.02 -51.93 -0.36 0.43 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.34 7.97 5.46 -39.29 -0.21 7.75 16 26 H 0.27 7.14 3.90 -40.82 -0.16 6.98 16 27 H 0.07 1.38 7.65 -51.93 -0.40 0.98 16 28 H 0.07 1.39 5.06 -51.93 -0.26 1.12 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.07 1.65 7.18 -51.93 -0.37 1.28 16 32 H 0.10 2.45 7.01 -51.93 -0.36 2.09 16 LS Contribution 253.88 15.07 3.83 3.83 Total: -1.00 -25.40 253.88 -7.61 -33.01 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.53 Total: 9.56 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 0.53 Total: -16.25 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.15 Total: -38.69 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.08 Total: 18.47 kcal Atomic # 16 Polarization: -7.44 SS G_CDS: -2.50 Total: -9.94 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -25.40 -7.61 -33.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261119507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.764 kcal (2) G-P(sol) polarization free energy of solvation -25.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds