Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40739 * 119.72463 * 2 1 4 4 C 1.35869 * 119.70046 * 180.02562 * 3 2 1 5 5 C 1.41096 * 119.29794 * 359.97438 * 4 3 2 6 6 C 1.38410 * 132.46430 * 180.33665 * 5 4 3 7 7 C 1.39783 * 107.05135 * 180.09926 * 6 5 4 8 8 C 1.50700 * 126.00565 * 179.87875 * 7 6 5 9 9 C 1.50702 * 109.46869 * 269.68651 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.35471 * 107.98236 * 359.61254 * 7 6 5 18 18 N 1.36300 * 108.98007 * 0.24093 * 17 7 6 19 19 C 1.34642 * 119.72448 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.47457 * 269.98193 * 1 2 3 21 21 H 1.08997 * 109.46787 * 29.98691 * 1 2 3 22 22 H 1.09011 * 109.46692 * 149.97793 * 1 2 3 23 23 H 1.08001 * 120.14921 * 0.04172 * 3 2 1 24 24 H 1.08004 * 120.35179 * 180.02562 * 4 3 2 25 25 H 1.08000 * 126.47833 * 359.95558 * 6 5 4 26 26 H 1.09004 * 109.47210 * 149.68944 * 8 7 6 27 27 H 1.08994 * 109.47551 * 29.68597 * 8 7 6 28 28 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 29 29 H 1.08001 * 125.50988 * 180.24564 * 17 7 6 30 30 H 1.08001 * 119.65848 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.2222 0.0000 4 6 3.5635 1.2216 -0.0005 5 6 4.2535 -0.0091 -0.0005 6 6 5.6010 -0.3250 0.0050 7 6 5.6952 -1.7196 -0.0005 8 6 6.9712 -2.5214 0.0000 9 6 7.3966 -2.7893 -1.4207 10 1 6.8027 -2.4159 -2.2419 11 6 8.5475 -3.5058 -1.6723 12 7 8.9217 -3.7349 -2.9121 13 14 9.5751 -4.1511 -0.2521 14 1 9.1069 -5.5102 0.1202 15 1 11.0013 -4.2137 -0.6615 16 1 9.4343 -3.2423 0.9139 17 6 4.4377 -2.2237 -0.0005 18 7 3.5467 -1.1923 -0.0004 19 6 2.1746 -1.1693 -0.0005 20 1 -0.3634 -0.0003 1.0276 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6628 2.1563 0.0007 24 1 4.1097 2.1534 -0.0001 25 1 6.4243 0.3740 0.0101 26 1 6.8052 -3.4681 0.5142 27 1 7.7523 -1.9611 0.5136 28 1 9.7311 -4.2392 -3.0890 29 1 4.1826 -3.2731 -0.0003 30 1 1.6246 -2.0987 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = 62.973774 kcal Electronic energy + Delta-G solvation = -13325.746712 eV Core-core repulsion = 11086.610218 eV Total energy + Delta-G solvation = -2239.136493 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.58558 -36.91585 -33.36760 -32.54211 -31.63306 -29.06742 -27.16036 -25.65223 -23.00132 -22.16332 -21.04133 -18.68783 -17.09818 -16.68690 -15.88481 -14.88671 -14.87153 -14.14095 -14.05330 -13.35145 -13.30136 -12.61139 -12.44026 -12.24010 -11.92155 -11.69974 -11.20558 -11.11366 -10.68917 -10.33591 -10.24730 -10.05230 -9.68292 -9.26499 -8.50962 -7.51286 -6.80486 -6.00001 -3.97700 1.21917 1.80389 3.25284 3.33595 3.41241 3.45193 3.64630 3.92443 4.48096 4.72733 4.91537 5.12718 5.21136 5.32937 5.46320 5.48850 5.51266 5.78701 5.90218 6.10102 6.18876 6.39892 6.45035 6.56220 6.84559 6.87673 7.10332 7.28060 7.56294 7.75617 7.78269 7.90504 8.60445 9.07145 9.60956 11.13391 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062485 B = 0.006273 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.998304 B = 4462.583981 C = 4539.193989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.132 4.132 3 C -0.142 4.142 4 C -0.076 4.076 5 C 0.019 3.981 6 C -0.195 4.195 7 C -0.055 4.055 8 C 0.042 3.958 9 C -0.508 4.508 10 H 0.072 0.928 11 C 0.067 3.933 12 N -0.904 5.904 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.264 1.264 17 C -0.066 4.066 18 N -0.350 5.350 19 C 0.051 3.949 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.124 0.876 24 H 0.135 0.865 25 H 0.140 0.860 26 H 0.021 0.979 27 H 0.029 0.971 28 H 0.263 0.737 29 H 0.164 0.836 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.296 7.205 7.571 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.135 4.135 3 C -0.162 4.162 4 C -0.095 4.095 5 C -0.085 4.085 6 C -0.220 4.220 7 C -0.059 4.059 8 C 0.004 3.996 9 C -0.546 4.546 10 H 0.091 0.909 11 C -0.134 4.134 12 N -0.543 5.543 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.193 4.193 18 N -0.014 5.014 19 C -0.069 4.069 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.142 0.858 24 H 0.153 0.847 25 H 0.158 0.842 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.181 0.819 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.376 6.990 7.460 17.640 hybrid contribution 0.610 -0.463 0.474 0.901 sum -13.766 6.526 7.933 17.176 Atomic orbital electron populations 1.20576 0.90156 1.02670 1.02041 1.19173 0.96371 0.92059 1.05898 1.20676 0.93805 0.97124 1.04577 1.20516 0.93923 0.95652 0.99377 1.18831 0.91988 0.85589 1.12046 1.21018 0.92689 0.95795 1.12523 1.19903 0.94636 0.93443 0.97887 1.18278 0.89337 0.93757 0.98246 1.21001 1.08710 1.34119 0.90774 0.90940 1.25006 0.97200 0.95748 0.95466 1.69909 1.24666 1.40957 1.18746 0.86803 0.79617 0.79729 0.83349 1.20268 1.21349 1.18856 1.21679 0.87673 0.91872 1.18068 1.41503 1.04246 1.07922 1.47738 1.21315 0.81659 0.99524 1.04429 0.91503 0.91430 0.91788 0.85779 0.84697 0.84248 0.96071 0.95284 0.92736 0.81902 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.99 36.01 0.36 -0.49 16 2 C -0.13 -1.68 5.84 -104.95 -0.61 -2.29 16 3 C -0.14 -1.83 9.74 -39.49 -0.38 -2.22 16 4 C -0.08 -1.13 10.11 -39.35 -0.40 -1.53 16 5 C 0.02 0.35 6.74 -84.03 -0.57 -0.22 16 6 C -0.19 -4.04 10.92 -38.94 -0.43 -4.46 16 7 C -0.06 -1.24 5.29 -105.03 -0.56 -1.79 16 8 C 0.04 1.03 4.53 -29.03 -0.13 0.90 16 9 C -0.51 -14.85 9.65 -34.44 -0.33 -15.18 16 10 H 0.07 2.34 7.98 -52.49 -0.42 1.92 16 11 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 12 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 13 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 17 C -0.07 -1.32 11.52 -16.55 -0.19 -1.51 16 18 N -0.35 -6.39 2.95 -60.84 -0.18 -6.57 16 19 C 0.05 0.75 10.52 -16.41 -0.17 0.57 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 22 H 0.06 0.50 8.07 -51.92 -0.42 0.08 16 23 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 24 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 25 H 0.14 2.69 8.06 -52.49 -0.42 2.26 16 26 H 0.02 0.51 7.58 -51.93 -0.39 0.11 16 27 H 0.03 0.72 7.19 -51.93 -0.37 0.34 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.16 2.91 8.06 -52.49 -0.42 2.49 16 30 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -32.75 261.08 -7.38 -40.12 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -3.73 Total: -0.74 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -3.51 Total: -26.35 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.59 Total: -34.01 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.75 -7.38 -40.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.098 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds