Wall clock time and date at job start Mon Mar 30 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40739 * 119.72463 * 2 1 4 4 C 1.35869 * 119.70046 * 180.02562 * 3 2 1 5 5 C 1.41096 * 119.29794 * 359.97438 * 4 3 2 6 6 C 1.38410 * 132.46430 * 180.33665 * 5 4 3 7 7 C 1.39783 * 107.05135 * 180.09926 * 6 5 4 8 8 C 1.50700 * 126.00565 * 179.87875 * 7 6 5 9 9 C 1.50702 * 109.46869 * 269.68651 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.35471 * 107.98236 * 359.61254 * 7 6 5 18 18 N 1.36300 * 108.98007 * 0.24093 * 17 7 6 19 19 C 1.34642 * 119.72448 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.47457 * 269.98193 * 1 2 3 21 21 H 1.08997 * 109.46787 * 29.98691 * 1 2 3 22 22 H 1.09011 * 109.46692 * 149.97793 * 1 2 3 23 23 H 1.08001 * 120.14921 * 0.04172 * 3 2 1 24 24 H 1.08004 * 120.35179 * 180.02562 * 4 3 2 25 25 H 1.08000 * 126.47833 * 359.95558 * 6 5 4 26 26 H 1.09004 * 109.47210 * 149.68944 * 8 7 6 27 27 H 1.08994 * 109.47551 * 29.68597 * 8 7 6 28 28 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 29 29 H 1.08001 * 125.50988 * 180.24564 * 17 7 6 30 30 H 1.08001 * 119.65848 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.2222 0.0000 4 6 3.5635 1.2216 -0.0005 5 6 4.2535 -0.0091 -0.0005 6 6 5.6010 -0.3250 0.0050 7 6 5.6952 -1.7196 -0.0005 8 6 6.9712 -2.5214 0.0000 9 6 7.3966 -2.7893 -1.4207 10 1 6.8027 -2.4159 -2.2419 11 6 8.5475 -3.5058 -1.6723 12 7 8.9217 -3.7349 -2.9121 13 14 9.5751 -4.1511 -0.2521 14 1 9.1069 -5.5102 0.1202 15 1 11.0013 -4.2137 -0.6615 16 1 9.4343 -3.2423 0.9139 17 6 4.4377 -2.2237 -0.0005 18 7 3.5467 -1.1923 -0.0004 19 6 2.1746 -1.1693 -0.0005 20 1 -0.3634 -0.0003 1.0276 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6628 2.1563 0.0007 24 1 4.1097 2.1534 -0.0001 25 1 6.4243 0.3740 0.0101 26 1 6.8052 -3.4681 0.5142 27 1 7.7523 -1.9611 0.5136 28 1 9.7311 -4.2392 -3.0890 29 1 4.1826 -3.2731 -0.0003 30 1 1.6246 -2.0987 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:48 Heat of formation + Delta-G solvation = 44.054921 kcal Electronic energy + Delta-G solvation = -13326.567095 eV Core-core repulsion = 11086.610218 eV Total energy + Delta-G solvation = -2239.956876 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.94555 -38.15130 -35.32354 -33.89520 -33.21532 -30.66900 -28.57487 -26.95157 -24.55340 -23.72467 -22.34607 -20.26243 -18.93940 -18.40524 -17.07043 -16.36967 -16.16703 -15.91296 -15.26681 -14.94761 -14.42201 -14.14418 -14.01466 -13.61914 -13.16528 -13.08421 -12.80461 -12.37283 -12.21461 -12.09965 -11.90336 -11.65827 -11.52826 -11.03303 -10.76406 -9.02617 -8.27771 -8.14044 -6.32347 0.04918 0.53688 1.37813 1.40489 1.53374 1.94887 2.10175 2.38074 2.65532 3.06259 3.66120 3.93826 4.02973 4.13423 4.25464 4.48749 4.62103 4.73857 4.86204 4.89772 5.00834 5.03435 5.11861 5.19822 5.35786 5.43409 5.48994 5.59098 5.82241 6.03274 6.20191 6.32454 6.53982 6.73754 7.30677 8.89427 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062485 B = 0.006273 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.998304 B = 4462.583981 C = 4539.193989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.119 4.119 3 C -0.119 4.119 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.239 4.239 7 C -0.095 4.095 8 C 0.051 3.949 9 C -0.518 4.518 10 H 0.021 0.979 11 C 0.005 3.995 12 N -0.953 5.953 13 Si 0.956 3.044 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.247 1.247 17 C -0.082 4.082 18 N -0.350 5.350 19 C 0.022 3.978 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.166 0.834 24 H 0.158 0.842 25 H 0.138 0.862 26 H 0.031 0.969 27 H 0.028 0.972 28 H 0.267 0.733 29 H 0.176 0.824 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.745 8.106 9.312 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.085 4.085 6 C -0.263 4.263 7 C -0.099 4.099 8 C 0.013 3.987 9 C -0.556 4.556 10 H 0.039 0.961 11 C -0.191 4.191 12 N -0.594 5.594 13 Si 0.778 3.222 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.171 1.171 17 C -0.210 4.210 18 N -0.014 5.014 19 C -0.097 4.097 20 H 0.103 0.897 21 H 0.104 0.896 22 H 0.094 0.906 23 H 0.184 0.816 24 H 0.175 0.825 25 H 0.155 0.845 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.193 0.807 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.861 7.894 9.208 20.770 hybrid contribution 1.080 -0.577 -0.151 1.234 sum -15.781 7.317 9.057 19.611 Atomic orbital electron populations 1.20707 0.86667 1.04272 1.03646 1.19839 0.98738 0.91199 1.02395 1.21288 0.93110 0.99033 1.00469 1.20868 0.95158 0.95013 1.00996 1.19222 0.91547 0.87205 1.10497 1.21068 0.94212 0.95294 1.15759 1.19794 0.94684 0.94344 1.01041 1.18068 0.90828 0.94585 0.95223 1.21200 1.08512 1.34013 0.91875 0.96084 1.26024 0.98534 0.95818 0.98718 1.70072 1.25609 1.42170 1.21509 0.85580 0.77369 0.79685 0.79554 1.18680 1.20709 1.17069 1.21703 0.87541 0.92863 1.18873 1.41649 1.05601 1.07196 1.46942 1.22032 0.80145 1.01919 1.05578 0.89691 0.89561 0.90601 0.81649 0.82464 0.84455 0.95081 0.95354 0.92370 0.80659 0.80521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 9.99 71.24 0.71 -0.45 16 2 C -0.12 -2.54 5.84 -20.08 -0.12 -2.66 16 3 C -0.12 -2.57 9.74 22.33 0.22 -2.35 16 4 C -0.10 -2.84 10.11 22.42 0.23 -2.61 16 5 C 0.02 0.78 6.74 38.94 0.26 1.05 16 6 C -0.24 -10.39 10.92 22.68 0.25 -10.15 16 7 C -0.09 -4.47 5.29 -20.13 -0.11 -4.58 16 8 C 0.05 2.62 4.53 29.10 0.13 2.75 16 9 C -0.52 -31.91 9.65 25.60 0.25 -31.66 16 10 H 0.02 1.45 7.98 -2.91 -0.02 1.43 16 11 C 0.01 0.33 5.47 84.66 0.46 0.79 16 12 N -0.95 -61.75 13.96 21.45 0.30 -61.45 16 13 Si 0.96 45.42 27.47 68.60 1.88 47.30 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 16 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 17 C -0.08 -3.40 11.52 83.36 0.96 -2.44 16 18 N -0.35 -12.69 2.95 -346.41 -1.02 -13.71 16 19 C 0.02 0.60 10.52 83.02 0.87 1.47 16 20 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.09 0.80 8.09 -2.39 -0.02 0.78 16 22 H 0.08 0.81 8.07 -2.38 -0.02 0.79 16 23 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 24 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 25 H 0.14 5.70 8.06 -2.91 -0.02 5.67 16 26 H 0.03 1.51 7.58 -2.38 -0.02 1.49 16 27 H 0.03 1.43 7.19 -2.39 -0.02 1.41 16 28 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 29 H 0.18 6.46 8.06 -2.91 -0.02 6.43 16 30 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -75.35 261.08 6.34 -69.01 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 1.06 Total: 9.69 kcal Atomic # 6 Polarization: -54.96 SS G_CDS: 4.12 Total: -50.84 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -0.72 Total: -75.16 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -75.35 6.34 -69.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.061 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds