Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47079 * 119.99541 * 2 1 3 5 5 N 1.46901 * 109.46880 * 64.99895 * 4 2 1 6 6 C 1.46905 * 110.99610 * 174.91683 * 5 4 2 7 7 C 1.50705 * 112.49427 * 297.82721 * 6 5 4 8 8 H 1.08004 * 119.99332 * 124.30809 * 7 6 5 9 9 C 1.37871 * 120.00372 * 304.02935 * 7 6 5 10 10 N 1.31519 * 120.00047 * 355.08106 * 9 7 6 11 11 Si 1.86800 * 120.00004 * 175.08699 * 9 7 6 12 12 H 1.48500 * 109.47225 * 60.00027 * 11 9 7 13 13 H 1.48506 * 109.46911 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46962 * 299.99557 * 11 9 7 15 15 C 1.53038 * 113.15589 * 67.61594 * 6 5 4 16 16 S 1.81503 * 89.86310 * 82.41319 * 15 6 5 17 17 C 1.53043 * 113.14838 * 168.05026 * 6 5 4 18 18 H 1.09002 * 109.47195 * 300.00681 * 1 2 3 19 19 H 1.09004 * 109.46982 * 60.00496 * 1 2 3 20 20 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47373 * 239.99962 * 2 1 3 22 22 H 1.08999 * 109.46853 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.46861 * 299.99578 * 3 2 1 24 24 H 1.08994 * 109.47102 * 59.99796 * 3 2 1 25 25 H 1.09006 * 109.47064 * 305.00544 * 4 2 1 26 26 H 1.08994 * 109.47218 * 185.00324 * 4 2 1 27 27 H 1.00897 * 111.00242 * 298.86706 * 5 4 2 28 28 H 0.96995 * 119.99660 * 179.97438 * 10 9 7 29 29 H 1.08994 * 113.15193 * 197.65898 * 15 6 5 30 30 H 1.09005 * 113.14850 * 327.14327 * 15 6 5 31 31 H 1.08990 * 113.15280 * 32.85558 * 17 6 5 32 32 H 1.08999 * 113.14817 * 162.30144 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6513 -2.1366 1.1905 6 6 2.2266 -2.8875 2.3145 7 6 3.7336 -2.8853 2.2982 8 1 4.2823 -2.5332 3.1593 9 6 4.4117 -3.3380 1.1865 10 7 3.7477 -3.8614 0.1791 11 14 6.2737 -3.2082 1.1111 12 1 6.8694 -3.9778 2.2327 13 1 6.7566 -3.7614 -0.1797 14 1 6.6753 -1.7827 1.2204 15 6 1.6389 -2.4870 3.6695 16 16 0.2216 -3.5815 3.3735 17 6 1.6287 -4.2875 2.4715 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.6053 -0.2616 2.1370 26 1 3.1262 -0.6442 1.2953 27 1 0.6475 -2.2352 1.1659 28 1 4.2249 -4.1796 -0.6032 29 1 2.2538 -2.8008 4.5130 30 1 1.3635 -1.4336 3.7227 31 1 1.3449 -4.7413 1.5220 32 1 2.2420 -4.9493 3.0831 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167736.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = 9.913354 kcal Electronic energy + Delta-G solvation = -13292.776196 eV Core-core repulsion = 11186.782782 eV Total energy + Delta-G solvation = -2105.993414 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.55774 -35.09752 -31.96489 -30.00692 -26.74122 -25.43470 -25.28817 -23.84863 -19.41446 -19.27502 -16.45774 -15.24606 -15.04085 -14.55023 -14.33959 -13.79807 -13.29665 -12.80758 -12.31911 -12.06724 -11.88921 -11.81080 -11.62035 -11.16682 -11.00782 -10.87957 -10.32087 -10.29071 -10.23243 -10.07395 -9.75509 -9.50103 -8.84997 -8.38424 -7.08947 -6.92019 -6.00336 -4.14695 2.77269 3.04544 3.29110 3.34566 3.37309 4.38465 5.14066 5.30591 5.48417 5.55291 5.73910 5.88863 5.99084 6.09214 6.19507 6.25891 6.28698 6.36209 6.47101 6.54885 6.55241 6.63587 6.74539 6.95776 7.04380 7.18360 7.75755 7.98730 8.45514 8.74726 9.00270 9.52950 11.03096 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.015404 C = 0.009862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.231426 B = 1817.328016 C = 2838.468339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.142 4.142 4 C 0.083 3.917 5 N -0.633 5.633 6 C 0.263 3.737 7 C -0.526 4.526 8 H 0.061 0.939 9 C 0.092 3.908 10 N -0.837 5.837 11 Si 0.883 3.117 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.092 4.092 16 S -0.416 6.416 17 C -0.024 4.024 18 H 0.044 0.956 19 H 0.044 0.956 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.004 0.996 26 H 0.080 0.920 27 H 0.318 0.682 28 H 0.259 0.741 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 5.308 0.431 5.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.200 4.200 4 C -0.047 4.047 5 N -0.262 5.262 6 C 0.170 3.830 7 C -0.567 4.567 8 H 0.079 0.921 9 C -0.116 4.116 10 N -0.470 5.470 11 Si 0.710 3.290 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.243 4.243 16 S -0.191 6.191 17 C -0.172 4.172 18 H 0.063 0.937 19 H 0.063 0.937 20 H 0.078 0.922 21 H 0.096 0.904 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.022 0.978 26 H 0.098 0.902 27 H 0.137 0.863 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.374 4.831 0.083 5.893 hybrid contribution 1.421 0.427 0.556 1.585 sum -1.952 5.258 0.639 5.645 Atomic orbital electron populations 1.21828 0.96328 1.01703 1.00297 1.21131 0.94910 0.94990 1.00411 1.21789 1.01010 0.96609 1.00629 1.21695 1.01371 0.88331 0.93307 1.60367 1.13132 1.08289 1.44386 1.19085 0.94966 0.87128 0.81842 1.20526 0.88027 1.46483 1.01642 0.92065 1.24890 0.97449 0.93980 0.95331 1.70057 1.34943 1.36132 1.05840 0.86843 0.86369 0.78518 0.77284 1.20306 1.21299 1.20202 1.25548 0.92363 0.99539 1.06815 1.88450 1.21034 1.39063 1.70533 1.24879 0.88377 1.04045 0.99935 0.93692 0.93689 0.92227 0.90435 0.92781 0.93434 0.93400 0.97835 0.90175 0.86289 0.93088 0.89131 0.91065 0.89238 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.96 37.16 0.33 -1.88 16 2 C -0.10 -1.63 3.13 -90.62 -0.28 -1.91 16 3 C -0.14 -2.06 9.19 37.16 0.34 -1.72 16 4 C 0.08 1.64 4.75 -3.82 -0.02 1.63 16 5 N -0.63 -13.95 5.70 -111.83 -0.64 -14.59 16 6 C 0.26 6.00 0.41 -132.71 -0.05 5.95 16 7 C -0.53 -13.10 7.21 -34.44 -0.25 -13.35 16 8 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 9 C 0.09 2.34 5.37 -17.82 -0.10 2.25 16 10 N -0.84 -22.12 12.63 55.43 0.70 -21.42 16 11 Si 0.88 19.83 29.54 -169.99 -5.02 14.81 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C -0.09 -1.92 7.05 37.18 0.26 -1.66 16 16 S -0.42 -8.79 23.80 -107.50 -2.56 -11.35 16 17 C -0.02 -0.54 6.97 37.18 0.26 -0.29 16 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.06 0.98 6.80 -51.93 -0.35 0.63 16 21 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.00 0.07 6.81 -51.93 -0.35 -0.28 16 26 H 0.08 1.78 7.16 -51.93 -0.37 1.40 16 27 H 0.32 6.85 6.12 -39.29 -0.24 6.61 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.09 1.84 8.11 -51.93 -0.42 1.41 16 30 H 0.07 1.43 6.73 -51.93 -0.35 1.08 16 31 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 32 H 0.09 2.01 8.11 -51.93 -0.42 1.59 16 LS Contribution 269.01 15.07 4.05 4.05 Total: -1.00 -25.40 269.01 -7.98 -33.38 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.02 Total: 6.10 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 0.50 Total: -10.98 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.06 Total: -36.01 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -2.56 Total: -11.35 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -25.40 -7.98 -33.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167736.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.295 kcal (2) G-P(sol) polarization free energy of solvation -25.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds