Wall clock time and date at job start Mon Mar 30 2020 02:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.52999 * 109.47079 * 119.99541 * 2 1 3 5 5 N 1.46901 * 109.46880 * 64.99895 * 4 2 1 6 6 C 1.46905 * 110.99610 * 174.91683 * 5 4 2 7 7 C 1.50705 * 112.49427 * 297.82721 * 6 5 4 8 8 H 1.08004 * 119.99332 * 124.30809 * 7 6 5 9 9 C 1.37871 * 120.00372 * 304.02935 * 7 6 5 10 10 N 1.31519 * 120.00047 * 355.08106 * 9 7 6 11 11 Si 1.86800 * 120.00004 * 175.08699 * 9 7 6 12 12 H 1.48500 * 109.47225 * 60.00027 * 11 9 7 13 13 H 1.48506 * 109.46911 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46962 * 299.99557 * 11 9 7 15 15 C 1.53038 * 113.15589 * 67.61594 * 6 5 4 16 16 S 1.81503 * 89.86310 * 82.41319 * 15 6 5 17 17 C 1.53043 * 113.14838 * 168.05026 * 6 5 4 18 18 H 1.09002 * 109.47195 * 300.00681 * 1 2 3 19 19 H 1.09004 * 109.46982 * 60.00496 * 1 2 3 20 20 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47373 * 239.99962 * 2 1 3 22 22 H 1.08999 * 109.46853 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.46861 * 299.99578 * 3 2 1 24 24 H 1.08994 * 109.47102 * 59.99796 * 3 2 1 25 25 H 1.09006 * 109.47064 * 305.00544 * 4 2 1 26 26 H 1.08994 * 109.47218 * 185.00324 * 4 2 1 27 27 H 1.00897 * 111.00242 * 298.86706 * 5 4 2 28 28 H 0.96995 * 119.99660 * 179.97438 * 10 9 7 29 29 H 1.08994 * 113.15193 * 197.65898 * 15 6 5 30 30 H 1.09005 * 113.14850 * 327.14327 * 15 6 5 31 31 H 1.08990 * 113.15280 * 32.85558 * 17 6 5 32 32 H 1.08999 * 113.14817 * 162.30144 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6513 -2.1366 1.1905 6 6 2.2266 -2.8875 2.3145 7 6 3.7336 -2.8853 2.2982 8 1 4.2823 -2.5332 3.1593 9 6 4.4117 -3.3380 1.1865 10 7 3.7477 -3.8614 0.1791 11 14 6.2737 -3.2082 1.1111 12 1 6.8694 -3.9778 2.2327 13 1 6.7566 -3.7614 -0.1797 14 1 6.6753 -1.7827 1.2204 15 6 1.6389 -2.4870 3.6695 16 16 0.2216 -3.5815 3.3735 17 6 1.6287 -4.2875 2.4715 18 1 -0.3634 0.5139 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6766 1.9564 0.8899 25 1 1.6053 -0.2616 2.1370 26 1 3.1262 -0.6442 1.2953 27 1 0.6475 -2.2352 1.1659 28 1 4.2249 -4.1796 -0.6032 29 1 2.2538 -2.8008 4.5130 30 1 1.3635 -1.4336 3.7227 31 1 1.3449 -4.7413 1.5220 32 1 2.2420 -4.9493 3.0831 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167736.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:36 Heat of formation + Delta-G solvation = -4.257603 kcal Electronic energy + Delta-G solvation = -13293.390695 eV Core-core repulsion = 11186.782782 eV Total energy + Delta-G solvation = -2106.607913 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24979 -36.57593 -33.89527 -31.62014 -27.97334 -27.36007 -27.02062 -25.39996 -21.23515 -20.69471 -18.29625 -17.01624 -16.63139 -16.36927 -16.05413 -15.24287 -14.83630 -14.36899 -13.93492 -13.69579 -13.58568 -13.21113 -12.99151 -12.82666 -12.74580 -12.51496 -12.09692 -12.02307 -11.68879 -11.46607 -11.29379 -11.25681 -10.71303 -10.27842 -8.80288 -8.62200 -7.94083 -6.12879 1.03828 1.27666 1.49556 1.52333 1.56613 2.50973 3.28628 3.63335 4.13057 4.16096 4.27147 4.35257 4.46630 4.66033 4.68954 4.74196 4.84887 4.86884 4.97382 5.05284 5.16912 5.20507 5.27619 5.39071 5.60802 5.62955 5.79508 6.13066 6.65401 6.92013 7.22445 7.57147 9.07791 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.015404 C = 0.009862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.231426 B = 1817.328016 C = 2838.468339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.137 4.137 4 C 0.088 3.912 5 N -0.644 5.644 6 C 0.254 3.746 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.055 3.945 10 N -0.863 5.863 11 Si 0.936 3.064 12 H -0.274 1.274 13 H -0.290 1.290 14 H -0.275 1.275 15 C -0.086 4.086 16 S -0.392 6.392 17 C -0.026 4.026 18 H 0.053 0.947 19 H 0.065 0.935 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.011 0.989 26 H 0.053 0.947 27 H 0.320 0.680 28 H 0.256 0.744 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.736 6.453 0.800 7.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.195 4.195 4 C -0.042 4.042 5 N -0.274 5.274 6 C 0.160 3.840 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.151 4.151 10 N -0.497 5.497 11 Si 0.763 3.237 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.200 1.200 15 C -0.237 4.237 16 S -0.167 6.167 17 C -0.175 4.175 18 H 0.073 0.927 19 H 0.084 0.916 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.140 0.860 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.683 5.985 0.465 7.042 hybrid contribution 1.484 0.071 0.470 1.559 sum -2.199 6.056 0.935 6.510 Atomic orbital electron populations 1.21758 0.94744 1.01200 1.01798 1.21079 0.96217 0.96056 0.97791 1.21737 1.00625 0.94882 1.02206 1.21661 0.99756 0.87623 0.95141 1.60304 1.13209 1.09499 1.44349 1.19109 0.94271 0.87432 0.83168 1.20769 0.89380 1.45855 1.01448 0.92353 1.25431 1.00642 0.93858 0.95186 1.70167 1.36049 1.37279 1.06215 0.85993 0.82454 0.78325 0.76963 1.19958 1.21637 1.20045 1.25437 0.92242 1.00120 1.05859 1.88320 1.20058 1.38473 1.69800 1.24721 0.89531 1.03911 0.99312 0.92743 0.91603 0.93724 0.92726 0.93417 0.91393 0.92261 0.97078 0.92857 0.86037 0.93495 0.88513 0.90076 0.91127 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.96 71.98 0.64 -3.31 16 2 C -0.09 -3.04 3.13 -10.79 -0.03 -3.08 16 3 C -0.14 -3.66 9.19 71.98 0.66 -3.00 16 4 C 0.09 3.43 4.75 86.30 0.41 3.84 16 5 N -0.64 -28.27 5.70 -507.73 -2.89 -31.17 16 6 C 0.25 11.49 0.41 2.81 0.00 11.49 16 7 C -0.53 -26.49 7.21 25.60 0.18 -26.31 16 8 H 0.06 2.87 7.82 -2.91 -0.02 2.84 16 9 C 0.06 2.79 5.37 84.65 0.45 3.25 16 10 N -0.86 -46.08 12.63 21.45 0.27 -45.81 16 11 Si 0.94 40.73 29.54 68.60 2.03 42.75 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 15 C -0.09 -3.46 7.05 71.99 0.51 -2.95 16 16 S -0.39 -16.00 23.80 -56.49 -1.34 -17.35 16 17 C -0.03 -1.17 6.97 72.00 0.50 -0.67 16 18 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 19 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 20 H 0.04 1.40 6.80 -2.39 -0.02 1.39 16 21 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.01 0.42 6.81 -2.38 -0.02 0.40 16 26 H 0.05 2.36 7.16 -2.39 -0.02 2.35 16 27 H 0.32 13.65 6.12 -89.70 -0.55 13.10 16 28 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 29 H 0.10 3.77 8.11 -2.39 -0.02 3.75 16 30 H 0.08 3.09 6.73 -2.38 -0.02 3.07 16 31 H 0.07 3.41 8.14 -2.39 -0.02 3.40 16 32 H 0.09 3.88 8.11 -2.39 -0.02 3.86 16 Total: -1.00 -52.32 269.01 1.93 -50.39 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.54 Total: 21.93 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 3.33 Total: -20.75 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.62 Total: -76.98 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 16 Polarization: -16.00 SS G_CDS: -1.34 Total: -17.35 kcal Total: -52.32 1.93 -50.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167736.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.136 kcal (2) G-P(sol) polarization free energy of solvation -52.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds