Wall clock time and date at job start Mon Mar 30 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34304 * 126.47723 * 2 1 4 4 N 1.37004 * 109.93379 * 180.02562 * 3 2 1 5 5 C 1.37204 * 125.08844 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99932 * 201.03968 * 5 4 3 7 7 C 1.38854 * 119.99990 * 21.05274 * 5 4 3 8 8 N 1.31432 * 120.00216 * 10.75477 * 7 5 4 9 9 Si 1.86805 * 119.99778 * 190.76213 * 7 5 4 10 10 H 1.48496 * 109.47303 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47112 * 119.99872 * 9 7 5 12 12 H 1.48506 * 109.46747 * 239.99294 * 9 7 5 13 13 C 1.38114 * 109.81795 * 359.97438 * 4 3 2 14 14 C 1.38953 * 133.42017 * 179.97438 * 13 4 3 15 15 C 1.37896 * 119.92398 * 180.02562 * 14 13 4 16 16 C 1.38748 * 120.64429 * 359.75138 * 15 14 13 17 17 C 1.37777 * 120.36549 * 0.50703 * 16 15 14 18 18 C 1.50698 * 120.17489 * 179.77410 * 17 16 15 19 19 C 1.39512 * 119.65389 * 359.49413 * 17 16 15 20 20 H 1.08998 * 109.47369 * 269.94855 * 1 2 3 21 21 H 1.08998 * 109.47357 * 29.95776 * 1 2 3 22 22 H 1.09003 * 109.46910 * 149.95217 * 1 2 3 23 23 H 1.07997 * 125.02830 * 0.02562 * 3 2 1 24 24 H 0.96999 * 120.00022 * 180.02562 * 8 7 5 25 25 H 1.08006 * 120.03734 * 359.97438 * 14 13 4 26 26 H 1.08005 * 119.67498 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.81698 * 180.25727 * 16 15 14 28 28 H 1.09006 * 109.46970 * 269.72456 * 18 17 16 29 29 H 1.08997 * 109.47729 * 149.72304 * 18 17 16 30 30 H 1.09001 * 109.47470 * 29.71802 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3054 1.0799 0.0000 4 7 3.6187 0.6898 -0.0006 5 6 4.6945 1.5415 -0.0002 6 1 5.6596 1.1924 -0.3365 7 6 4.5423 2.8520 0.4327 8 7 3.4346 3.2202 1.0367 9 14 5.9120 4.0919 0.1564 10 1 7.0449 3.4310 -0.5398 11 1 5.4049 5.2124 -0.6757 12 1 6.3750 4.6178 1.4657 13 6 3.6976 -0.6891 -0.0004 14 6 4.7598 -1.5849 -0.0012 15 6 4.5151 -2.9420 -0.0013 16 6 3.2148 -3.4262 0.0047 17 6 2.1473 -2.5552 0.0002 18 6 0.7368 -3.0858 0.0016 19 6 2.3789 -1.1794 0.0004 20 1 -0.3634 -0.0009 1.0276 21 1 -0.3634 0.8903 -0.5132 22 1 -0.3633 -0.8896 -0.5146 23 1 1.9628 2.1041 0.0004 24 1 3.3282 4.1358 1.3388 25 1 5.7759 -1.2188 -0.0026 26 1 5.3437 -3.6348 -0.0023 27 1 3.0385 -4.4916 0.0088 28 1 0.3957 -3.2135 -1.0258 29 1 0.0838 -2.3809 0.5162 30 1 0.7105 -4.0468 0.5151 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261180452.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:41 Heat of formation + Delta-G solvation = 41.942320 kcal Electronic energy + Delta-G solvation = -13922.891432 eV Core-core repulsion = 11682.842946 eV Total energy + Delta-G solvation = -2240.048486 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05744 -36.31587 -33.45852 -32.44344 -30.23691 -28.25085 -27.20991 -25.42001 -23.83851 -20.86396 -20.50788 -18.68117 -17.07357 -15.58041 -14.99167 -14.50014 -14.34364 -13.70472 -13.41203 -12.61550 -12.55953 -12.21286 -12.09062 -11.82916 -11.64570 -11.31543 -11.23539 -11.18259 -10.75956 -10.55376 -10.38327 -10.05942 -9.65138 -9.13507 -8.26808 -7.05330 -6.81904 -6.41942 -4.26299 2.20691 2.68306 3.00748 3.03431 3.08883 3.81287 4.03748 4.73242 4.87998 5.07920 5.69861 5.76982 5.95419 6.04430 6.14732 6.19393 6.32681 6.37102 6.49362 6.56486 6.62180 6.72318 6.98797 7.05577 7.15357 7.18170 7.28576 7.53636 7.63794 7.75309 8.05704 8.25009 8.48960 9.03129 9.46683 10.29971 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037713 B = 0.010138 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.274883 B = 2761.212514 C = 3443.116362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.256 4.256 3 C 0.088 3.912 4 N -0.291 5.291 5 C -0.339 4.339 6 H 0.105 0.895 7 C 0.041 3.959 8 N -0.853 5.853 9 Si 0.939 3.061 10 H -0.264 1.264 11 H -0.274 1.274 12 H -0.275 1.275 13 C 0.054 3.946 14 C -0.114 4.114 15 C -0.136 4.136 16 C -0.175 4.175 17 C -0.054 4.054 18 C -0.107 4.107 19 C -0.108 4.108 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.169 0.831 24 H 0.278 0.722 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -4.535 -1.656 5.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.263 4.263 3 C -0.046 4.046 4 N 0.046 4.954 5 C -0.466 4.466 6 H 0.123 0.877 7 C -0.167 4.167 8 N -0.485 5.485 9 Si 0.764 3.236 10 H -0.188 1.188 11 H -0.199 1.199 12 H -0.201 1.201 13 C -0.057 4.057 14 C -0.134 4.134 15 C -0.155 4.155 16 C -0.194 4.194 17 C -0.054 4.054 18 C -0.164 4.164 19 C -0.114 4.114 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.186 0.814 24 H 0.089 0.911 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.631 -4.061 -1.551 4.642 hybrid contribution 0.794 0.725 0.056 1.077 sum -0.836 -3.336 -1.495 3.750 Atomic orbital electron populations 1.19904 0.91485 1.00271 0.99741 1.19873 0.93965 0.91094 1.21328 1.21893 0.82035 0.98988 1.01733 1.40168 1.05362 1.02076 1.47777 1.19869 0.90467 0.91918 1.44373 0.87732 1.25490 0.98570 0.98594 0.94041 1.69904 1.26176 1.19407 1.33045 0.85674 0.79861 0.79541 0.78569 1.18836 1.19905 1.20089 1.18355 0.94768 0.84293 1.08292 1.19846 0.96384 0.91990 1.05154 1.20393 0.96051 0.93837 1.05265 1.20348 0.92323 0.97538 1.09221 1.19070 0.94474 0.91430 1.00454 1.20753 0.94433 1.00097 1.01073 1.18715 0.92385 0.91910 1.08396 0.93847 0.93479 0.93043 0.81356 0.91136 0.87769 0.87658 0.87967 0.92360 0.91469 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 9.24 36.00 0.33 -0.74 16 2 C -0.26 -6.06 6.31 -102.61 -0.65 -6.71 16 3 C 0.09 2.29 9.81 -16.63 -0.16 2.13 16 4 N -0.29 -7.88 2.92 -59.73 -0.17 -8.05 16 5 C -0.34 -9.03 9.93 -14.92 -0.15 -9.18 16 6 H 0.10 2.67 7.85 -52.49 -0.41 2.26 16 7 C 0.04 1.04 5.35 -17.49 -0.09 0.94 16 8 N -0.85 -22.30 10.84 55.49 0.60 -21.70 16 9 Si 0.94 19.25 29.57 -169.99 -5.03 14.22 16 10 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.05 1.39 6.75 -83.84 -0.57 0.82 16 14 C -0.11 -2.58 9.95 -39.44 -0.39 -2.97 16 15 C -0.14 -2.70 10.02 -39.52 -0.40 -3.10 16 16 C -0.17 -3.40 9.69 -39.56 -0.38 -3.79 16 17 C -0.05 -1.12 5.91 -104.32 -0.62 -1.74 16 18 C -0.11 -1.78 9.14 36.00 0.33 -1.45 16 19 C -0.11 -2.61 6.14 -105.09 -0.65 -3.25 16 20 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 0.87 6.23 -51.93 -0.32 0.55 16 23 H 0.17 4.40 6.34 -52.49 -0.33 4.07 16 24 H 0.28 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 26 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.11 5.81 -51.93 -0.30 0.81 16 30 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 254.11 15.07 3.83 3.83 Total: -1.00 -28.35 254.11 -7.62 -35.97 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -3.46 Total: 4.76 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -3.39 Total: -29.03 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.43 Total: -29.75 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.35 -7.62 -35.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180452.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.916 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds