Wall clock time and date at job start Mon Mar 30 2020 02:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34304 * 126.47723 * 2 1 4 4 N 1.37004 * 109.93379 * 180.02562 * 3 2 1 5 5 C 1.37204 * 125.08844 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99932 * 201.03968 * 5 4 3 7 7 C 1.38854 * 119.99990 * 21.05274 * 5 4 3 8 8 N 1.31432 * 120.00216 * 10.75477 * 7 5 4 9 9 Si 1.86805 * 119.99778 * 190.76213 * 7 5 4 10 10 H 1.48496 * 109.47303 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47112 * 119.99872 * 9 7 5 12 12 H 1.48506 * 109.46747 * 239.99294 * 9 7 5 13 13 C 1.38114 * 109.81795 * 359.97438 * 4 3 2 14 14 C 1.38953 * 133.42017 * 179.97438 * 13 4 3 15 15 C 1.37896 * 119.92398 * 180.02562 * 14 13 4 16 16 C 1.38748 * 120.64429 * 359.75138 * 15 14 13 17 17 C 1.37777 * 120.36549 * 0.50703 * 16 15 14 18 18 C 1.50698 * 120.17489 * 179.77410 * 17 16 15 19 19 C 1.39512 * 119.65389 * 359.49413 * 17 16 15 20 20 H 1.08998 * 109.47369 * 269.94855 * 1 2 3 21 21 H 1.08998 * 109.47357 * 29.95776 * 1 2 3 22 22 H 1.09003 * 109.46910 * 149.95217 * 1 2 3 23 23 H 1.07997 * 125.02830 * 0.02562 * 3 2 1 24 24 H 0.96999 * 120.00022 * 180.02562 * 8 7 5 25 25 H 1.08006 * 120.03734 * 359.97438 * 14 13 4 26 26 H 1.08005 * 119.67498 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.81698 * 180.25727 * 16 15 14 28 28 H 1.09006 * 109.46970 * 269.72456 * 18 17 16 29 29 H 1.08997 * 109.47729 * 149.72304 * 18 17 16 30 30 H 1.09001 * 109.47470 * 29.71802 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3054 1.0799 0.0000 4 7 3.6187 0.6898 -0.0006 5 6 4.6945 1.5415 -0.0002 6 1 5.6596 1.1924 -0.3365 7 6 4.5423 2.8520 0.4327 8 7 3.4346 3.2202 1.0367 9 14 5.9120 4.0919 0.1564 10 1 7.0449 3.4310 -0.5398 11 1 5.4049 5.2124 -0.6757 12 1 6.3750 4.6178 1.4657 13 6 3.6976 -0.6891 -0.0004 14 6 4.7598 -1.5849 -0.0012 15 6 4.5151 -2.9420 -0.0013 16 6 3.2148 -3.4262 0.0047 17 6 2.1473 -2.5552 0.0002 18 6 0.7368 -3.0858 0.0016 19 6 2.3789 -1.1794 0.0004 20 1 -0.3634 -0.0009 1.0276 21 1 -0.3634 0.8903 -0.5132 22 1 -0.3633 -0.8896 -0.5146 23 1 1.9628 2.1041 0.0004 24 1 3.3282 4.1358 1.3388 25 1 5.7759 -1.2188 -0.0026 26 1 5.3437 -3.6348 -0.0023 27 1 3.0385 -4.4916 0.0088 28 1 0.3957 -3.2135 -1.0258 29 1 0.0838 -2.3809 0.5162 30 1 0.7105 -4.0468 0.5151 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261180452.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:41 Heat of formation + Delta-G solvation = 27.920097 kcal Electronic energy + Delta-G solvation = -13923.499481 eV Core-core repulsion = 11682.842946 eV Total energy + Delta-G solvation = -2240.656535 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.83487 -38.00278 -35.27060 -34.14955 -31.89828 -29.98321 -28.86474 -27.05765 -25.61513 -22.55174 -22.23635 -20.51154 -18.86946 -17.40654 -16.79448 -16.17744 -15.96094 -15.45297 -15.01463 -14.23181 -14.04358 -13.83784 -13.63307 -13.54356 -13.31065 -12.94634 -12.80793 -12.74414 -12.54082 -12.15858 -12.00743 -11.68256 -11.28549 -10.97789 -9.99000 -8.83557 -8.70044 -8.22650 -6.22860 0.50706 1.00118 1.32958 1.38103 1.49478 2.08501 2.20105 2.89531 3.07934 3.30019 4.14004 4.31612 4.33052 4.53533 4.65005 4.69790 4.89832 4.94536 4.95451 5.04502 5.05811 5.13347 5.22865 5.32615 5.42262 5.52766 5.57268 5.83375 5.86580 6.04076 6.37368 6.50197 6.59553 7.15502 7.57562 8.42213 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037713 B = 0.010138 C = 0.008130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.274883 B = 2761.212514 C = 3443.116362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.252 4.252 3 C 0.049 3.951 4 N -0.316 5.316 5 C -0.374 4.374 6 H 0.101 0.899 7 C -0.002 4.002 8 N -0.884 5.884 9 Si 1.012 2.988 10 H -0.259 1.259 11 H -0.265 1.265 12 H -0.269 1.269 13 C 0.018 3.982 14 C -0.148 4.148 15 C -0.118 4.118 16 C -0.174 4.174 17 C -0.058 4.058 18 C -0.105 4.105 19 C -0.138 4.138 20 H 0.053 0.947 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.155 0.845 24 H 0.283 0.717 25 H 0.103 0.897 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -6.473 -1.847 7.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.259 4.259 3 C -0.084 4.084 4 N 0.020 4.980 5 C -0.501 4.501 6 H 0.119 0.881 7 C -0.206 4.206 8 N -0.517 5.517 9 Si 0.833 3.167 10 H -0.182 1.182 11 H -0.190 1.190 12 H -0.194 1.194 13 C -0.092 4.092 14 C -0.168 4.168 15 C -0.137 4.137 16 C -0.193 4.193 17 C -0.059 4.059 18 C -0.161 4.161 19 C -0.144 4.144 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.093 0.907 23 H 0.172 0.828 24 H 0.093 0.907 25 H 0.121 0.879 26 H 0.161 0.839 27 H 0.163 0.837 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.960 -6.017 -1.743 6.563 hybrid contribution 0.856 1.129 0.120 1.422 sum -1.104 -4.887 -1.622 5.267 Atomic orbital electron populations 1.19986 0.88293 1.01885 1.00863 1.20446 0.96111 0.90391 1.18970 1.21933 0.82650 0.99204 1.04618 1.40365 1.05555 1.02844 1.49245 1.20163 0.90811 0.93145 1.45946 0.88097 1.26506 1.01131 0.99857 0.93101 1.70007 1.27972 1.20061 1.33674 0.84615 0.76734 0.76731 0.78668 1.18235 1.18992 1.19406 1.19010 0.96685 0.84281 1.09268 1.20103 0.95913 0.93231 1.07550 1.20900 0.97910 0.93011 1.01928 1.20885 0.91550 0.99547 1.07338 1.19643 0.97382 0.90170 0.98657 1.20816 0.91491 1.01245 1.02567 1.19157 0.91810 0.93640 1.09765 0.92810 0.92553 0.90719 0.82827 0.90665 0.87927 0.83872 0.83735 0.90638 0.91573 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.94 9.24 71.23 0.66 -1.29 16 2 C -0.25 -12.13 6.31 -18.56 -0.12 -12.25 16 3 C 0.05 2.69 9.81 82.99 0.81 3.51 16 4 N -0.32 -17.98 2.92 -342.90 -1.00 -18.98 16 5 C -0.37 -20.98 9.93 84.00 0.83 -20.14 16 6 H 0.10 5.46 7.85 -2.91 -0.02 5.44 16 7 C 0.00 -0.08 5.35 84.90 0.45 0.37 16 8 N -0.88 -48.18 10.84 21.65 0.23 -47.94 16 9 Si 1.01 40.36 29.57 68.60 2.03 42.38 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 11 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 12 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 13 C 0.02 0.97 6.75 38.92 0.26 1.23 16 14 C -0.15 -6.77 9.95 22.36 0.22 -6.55 16 15 C -0.12 -4.40 10.02 22.31 0.22 -4.18 16 16 C -0.17 -6.12 9.69 22.28 0.22 -5.91 16 17 C -0.06 -2.27 5.91 -19.67 -0.12 -2.38 16 18 C -0.10 -3.06 9.14 71.24 0.65 -2.41 16 19 C -0.14 -6.65 6.14 -20.17 -0.12 -6.77 16 20 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.07 2.35 6.23 -2.39 -0.01 2.34 16 23 H 0.15 8.58 6.34 -2.91 -0.02 8.56 16 24 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 26 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 27 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.08 1.97 8.14 -2.38 -0.02 1.96 16 29 H 0.07 1.95 5.81 -2.39 -0.01 1.94 16 30 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 Total: -1.00 -64.24 254.11 6.37 -57.86 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 1.13 Total: 23.44 kcal Atomic # 6 Polarization: -60.74 SS G_CDS: 3.98 Total: -56.76 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.77 Total: -66.92 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Total: -64.24 6.37 -57.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180452.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.782 kcal (2) G-P(sol) polarization free energy of solvation -64.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds