Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34301 * 125.03301 * 2 1 4 4 C 1.46663 * 107.04811 * 180.23333 * 3 2 1 5 5 C 1.39517 * 133.96972 * 179.76146 * 4 3 2 6 6 C 1.37778 * 119.65522 * 180.02562 * 5 4 3 7 7 C 1.38741 * 120.36795 * 359.97438 * 6 5 4 8 8 C 1.37899 * 120.64587 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.04080 * 180.02562 * 8 7 6 10 10 C 1.38957 * 119.92195 * 0.02562 * 8 7 6 11 11 N 1.37001 * 125.03268 * 179.80750 * 2 1 3 12 12 C 1.37203 * 125.09036 * 0.02562 * 11 2 1 13 13 H 1.08003 * 119.99830 * 231.44857 * 12 11 2 14 14 C 1.38854 * 120.00149 * 51.45736 * 12 11 2 15 15 N 1.31437 * 120.00137 * 199.57872 * 14 12 11 16 16 Si 1.86801 * 119.99864 * 19.30227 * 14 12 11 17 17 H 1.48493 * 109.47299 * 265.36278 * 16 14 12 18 18 H 1.48500 * 109.47224 * 25.36762 * 16 14 12 19 19 H 1.48502 * 109.46971 * 145.36676 * 16 14 12 20 20 H 1.09001 * 109.47323 * 274.43118 * 1 2 3 21 21 H 1.08999 * 109.47293 * 34.42735 * 1 2 3 22 22 H 1.09002 * 109.47514 * 154.43207 * 1 2 3 23 23 H 1.08008 * 126.47738 * 359.97438 * 3 2 1 24 24 H 1.08001 * 120.16723 * 0.03420 * 5 4 3 25 25 H 1.08004 * 119.81449 * 180.02562 * 6 5 4 26 26 H 1.08002 * 119.67901 * 180.02562 * 7 6 5 27 27 H 1.09000 * 109.47013 * 264.14747 * 9 8 7 28 28 H 1.08998 * 109.46764 * 24.14070 * 9 8 7 29 29 H 1.08998 * 109.47318 * 144.14891 * 9 8 7 30 30 H 0.96999 * 120.00225 * 179.71959 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2780 1.0997 0.0000 4 6 3.6729 0.6468 -0.0057 5 6 4.9043 1.3028 -0.0125 6 6 6.0689 0.5666 -0.0172 7 6 6.0221 -0.8200 -0.0147 8 6 4.8127 -1.4825 -0.0070 9 6 4.7779 -2.9892 -0.0038 10 6 3.6262 -0.7593 -0.0021 11 7 2.2935 -1.1218 0.0038 12 6 1.8270 -2.4121 0.0076 13 1 2.1913 -3.1158 0.7414 14 6 0.8866 -2.8132 -0.9320 15 7 0.1592 -3.8866 -0.7170 16 14 0.6500 -1.8229 -2.4981 17 1 -0.4612 -0.8561 -2.3094 18 1 1.9003 -1.0851 -2.8110 19 1 0.3229 -2.7402 -3.6192 20 1 -0.3634 0.0794 1.0246 21 1 -0.3634 0.8476 -0.5810 22 1 -0.3634 -0.9270 -0.4435 23 1 1.9355 2.1240 -0.0004 24 1 4.9442 2.3821 -0.0138 25 1 7.0235 1.0718 -0.0220 26 1 6.9419 -1.3861 -0.0181 27 1 4.6593 -3.3520 -1.0248 28 1 5.7092 -3.3732 0.4123 29 1 3.9399 -3.3320 0.6032 30 1 -0.5005 -4.1645 -1.3715 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261183380.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = 37.573009 kcal Electronic energy + Delta-G solvation = -14267.546371 eV Core-core repulsion = 12027.308417 eV Total energy + Delta-G solvation = -2240.237953 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09000 -38.12137 -35.30316 -33.87857 -32.02251 -31.36954 -28.15681 -27.19431 -25.92989 -22.42695 -21.59901 -21.35424 -19.09531 -17.78741 -16.65380 -16.13715 -15.83935 -15.81059 -15.06553 -14.48669 -14.47686 -14.22662 -13.81681 -13.70183 -13.34986 -13.14955 -13.02380 -12.76089 -12.21862 -12.11254 -12.04542 -11.50193 -11.47280 -11.03918 -10.15960 -8.79065 -8.73204 -8.31139 -6.48909 0.39067 0.93988 1.15407 1.23657 1.34678 1.93797 2.06368 2.65063 2.78608 3.19647 3.99809 4.15579 4.24780 4.43830 4.54696 4.60079 4.69218 4.74115 4.83554 4.87600 4.90589 5.04750 5.13286 5.27331 5.32450 5.48976 5.59889 5.85014 5.86529 5.93816 6.23079 6.34317 6.57520 6.98926 7.46039 8.38656 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.032187 B = 0.013821 C = 0.011182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.714627 B = 2025.372930 C = 2503.318484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.043 3.957 3 C -0.251 4.251 4 C -0.141 4.141 5 C -0.095 4.095 6 C -0.154 4.154 7 C -0.125 4.125 8 C -0.107 4.107 9 C -0.099 4.099 10 C 0.042 3.958 11 N -0.334 5.334 12 C -0.363 4.363 13 H 0.080 0.920 14 C 0.056 3.944 15 N -0.880 5.880 16 Si 0.916 3.084 17 H -0.229 1.229 18 H -0.283 1.283 19 H -0.277 1.277 20 H 0.082 0.918 21 H 0.095 0.905 22 H 0.056 0.944 23 H 0.161 0.839 24 H 0.139 0.861 25 H 0.151 0.849 26 H 0.144 0.856 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 7.670 -0.841 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.068 4.068 3 C -0.276 4.276 4 C -0.146 4.146 5 C -0.113 4.113 6 C -0.173 4.173 7 C -0.144 4.144 8 C -0.109 4.109 9 C -0.155 4.155 10 C -0.067 4.067 11 N -0.003 5.003 12 C -0.489 4.489 13 H 0.098 0.902 14 C -0.152 4.152 15 N -0.513 5.513 16 Si 0.739 3.261 17 H -0.152 1.152 18 H -0.209 1.209 19 H -0.203 1.203 20 H 0.101 0.899 21 H 0.114 0.886 22 H 0.075 0.925 23 H 0.178 0.822 24 H 0.156 0.844 25 H 0.168 0.832 26 H 0.162 0.838 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.967 7.147 -0.885 8.748 hybrid contribution -0.403 -0.314 -0.614 0.799 sum 4.564 6.833 -1.499 8.353 Atomic orbital electron populations 1.20694 0.87961 1.02920 1.03637 1.21018 0.94651 0.86537 1.04609 1.21494 0.90223 0.97670 1.18166 1.19548 0.94797 0.92077 1.08179 1.20701 0.90046 0.99949 1.00632 1.21082 0.98328 0.93497 1.04372 1.20929 0.95684 0.95070 1.02767 1.19259 0.91014 0.95994 1.04628 1.20678 1.02117 0.91433 1.01320 1.19061 0.86205 0.94575 1.06874 1.40176 1.02481 1.04566 1.53104 1.18869 1.26049 0.86498 1.17521 0.90220 1.25892 0.93651 0.96144 0.99475 1.69786 1.19743 1.25532 1.36277 0.86342 0.80262 0.79759 0.79767 1.15193 1.20864 1.20319 0.89898 0.88591 0.92536 0.82160 0.84368 0.83181 0.83847 0.93048 0.89962 0.93284 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.77 8.63 71.24 0.61 -3.16 16 2 C 0.04 2.00 5.32 40.85 0.22 2.22 16 3 C -0.25 -10.57 10.96 23.57 0.26 -10.31 16 4 C -0.14 -6.20 6.37 -20.17 -0.13 -6.33 16 5 C -0.09 -3.39 10.10 22.47 0.23 -3.16 16 6 C -0.15 -4.93 10.03 22.28 0.22 -4.71 16 7 C -0.13 -4.39 9.65 22.31 0.22 -4.17 16 8 C -0.11 -4.63 5.89 -19.77 -0.12 -4.74 16 9 C -0.10 -4.04 9.33 71.24 0.66 -3.38 16 10 C 0.04 2.03 6.70 38.93 0.26 2.30 16 11 N -0.33 -17.29 2.20 -329.67 -0.73 -18.02 16 12 C -0.36 -20.17 8.44 84.00 0.71 -19.46 16 13 H 0.08 4.81 6.39 -2.91 -0.02 4.79 16 14 C 0.06 3.02 4.41 84.90 0.37 3.39 16 15 N -0.88 -48.71 13.96 21.65 0.30 -48.41 16 16 Si 0.92 42.85 24.79 68.60 1.70 44.55 16 17 H -0.23 -9.50 6.05 99.48 0.60 -8.90 16 18 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H 0.08 2.98 8.14 -2.39 -0.02 2.97 16 21 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 22 H 0.06 2.47 3.85 -2.39 -0.01 2.47 16 23 H 0.16 5.49 8.06 -2.91 -0.02 5.47 16 24 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 25 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 26 H 0.14 3.97 8.05 -2.91 -0.02 3.95 16 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 29 H 0.05 2.27 5.48 -2.39 -0.01 2.26 16 30 H 0.29 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -62.61 245.76 5.83 -56.78 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.03 Total: 16.62 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 3.52 Total: -51.51 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: -0.42 Total: -66.43 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.70 Total: 44.55 kcal Total: -62.61 5.83 -56.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261183380.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.353 kcal (2) G-P(sol) polarization free energy of solvation -62.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds