Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34303 * 126.47276 * 2 1 4 4 N 1.37000 * 109.94308 * 179.97438 * 3 2 1 5 5 C 1.37203 * 125.09306 * 179.97438 * 4 3 2 6 6 H 1.07996 * 119.99960 * 154.33679 * 5 4 3 7 7 C 1.38854 * 119.99833 * 334.34509 * 5 4 3 8 8 N 1.31439 * 120.00025 * 359.44464 * 7 5 4 9 9 Si 1.86807 * 119.99850 * 179.44961 * 7 5 4 10 10 H 1.48501 * 109.46780 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46869 * 119.99280 * 9 7 5 12 12 H 1.48500 * 109.46780 * 239.99485 * 9 7 5 13 13 C 1.38120 * 109.81862 * 359.97438 * 4 3 2 14 14 C 1.40738 * 107.11253 * 359.72747 * 13 4 3 15 15 C 1.39473 * 119.94841 * 179.66257 * 14 13 4 16 16 C 1.37825 * 119.65589 * 0.61720 * 15 14 13 17 17 C 1.38703 * 120.36229 * 359.66367 * 16 15 14 18 18 C 1.37937 * 120.65103 * 0.03468 * 17 16 15 19 19 C 1.50699 * 120.04314 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.47016 * 90.02654 * 1 2 3 21 21 H 1.08995 * 109.47368 * 330.02914 * 1 2 3 22 22 H 1.08999 * 109.47068 * 210.02466 * 1 2 3 23 23 H 1.08002 * 125.02821 * 0.02562 * 3 2 1 24 24 H 0.96997 * 120.00006 * 180.02562 * 8 7 5 25 25 H 1.08002 * 120.17335 * 180.30247 * 15 14 13 26 26 H 1.07995 * 119.81686 * 179.67931 * 16 15 14 27 27 H 1.08004 * 119.67390 * 180.02562 * 17 16 15 28 28 H 1.08999 * 109.47096 * 263.35800 * 19 18 17 29 29 H 1.09000 * 109.47139 * 23.35839 * 19 18 17 30 30 H 1.08998 * 109.46924 * 143.35394 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0800 0.0000 4 7 3.6187 0.6902 0.0006 5 6 4.6943 1.5420 0.0002 6 1 5.6409 1.2166 0.4057 7 6 4.5657 2.8224 -0.5213 8 7 3.4166 3.2147 -1.0246 9 14 6.0259 3.9875 -0.5078 10 1 7.1942 3.3096 0.1094 11 1 6.3594 4.3792 -1.9008 12 1 5.6846 5.1997 0.2792 13 6 3.6980 -0.6887 0.0016 14 6 2.3789 -1.1793 0.0080 15 6 2.1475 -2.5547 0.0032 16 6 3.2155 -3.4259 0.0052 17 6 4.5153 -2.9417 0.0047 18 6 4.7600 -1.5842 0.0031 19 6 6.1777 -1.0731 0.0033 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3634 0.8902 0.5133 22 1 -0.3633 -0.8898 0.5142 23 1 1.9627 2.1042 0.0004 24 1 3.3269 4.1090 -1.3893 25 1 1.1367 -2.9352 0.0032 26 1 3.0394 -4.4914 0.0067 27 1 5.3439 -3.6344 0.0058 28 1 6.4786 -0.8368 1.0239 29 1 6.8397 -1.8379 -0.4028 30 1 6.2401 -0.1750 -0.6112 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261192824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = 42.676142 kcal Electronic energy + Delta-G solvation = -14025.808508 eV Core-core repulsion = 11785.791844 eV Total energy + Delta-G solvation = -2240.016665 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07987 -36.17291 -33.70158 -32.15607 -30.35910 -28.23397 -26.95880 -25.53561 -23.79006 -20.87188 -20.55935 -18.46916 -17.31460 -15.64130 -14.80763 -14.50562 -14.26866 -13.73667 -13.32191 -12.51281 -12.48266 -12.15205 -12.00178 -11.98104 -11.56467 -11.39942 -11.29474 -11.05816 -10.67348 -10.54188 -10.43303 -9.87867 -9.71028 -9.14343 -8.22744 -6.99741 -6.79275 -6.43996 -4.28113 2.21921 2.69276 3.00229 3.03004 3.07762 3.80912 4.06157 4.76637 4.89005 5.04996 5.77347 5.81006 5.90994 6.12272 6.17300 6.35587 6.38086 6.43289 6.54217 6.55637 6.69449 6.77590 7.00192 7.05233 7.20289 7.23878 7.28660 7.57079 7.64449 7.75487 8.07165 8.25656 8.51723 9.03022 9.48220 10.31672 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.012141 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.061467 B = 2305.735862 C = 3183.857829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.263 4.263 3 C 0.092 3.908 4 N -0.292 5.292 5 C -0.340 4.340 6 H 0.112 0.888 7 C 0.040 3.960 8 N -0.856 5.856 9 Si 0.937 3.063 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.275 1.275 13 C 0.057 3.943 14 C -0.109 4.109 15 C -0.090 4.090 16 C -0.169 4.169 17 C -0.143 4.143 18 C -0.076 4.076 19 C -0.112 4.112 20 H 0.042 0.958 21 H 0.047 0.953 22 H 0.045 0.955 23 H 0.173 0.827 24 H 0.277 0.723 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 -3.694 1.334 3.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.269 4.269 3 C -0.043 4.043 4 N 0.046 4.954 5 C -0.467 4.467 6 H 0.129 0.871 7 C -0.168 4.168 8 N -0.489 5.489 9 Si 0.762 3.238 10 H -0.188 1.188 11 H -0.200 1.200 12 H -0.200 1.200 13 C -0.054 4.054 14 C -0.115 4.115 15 C -0.108 4.108 16 C -0.188 4.188 17 C -0.163 4.163 18 C -0.078 4.078 19 C -0.169 4.169 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.190 0.810 24 H 0.088 0.912 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.897 -3.219 1.230 3.561 hybrid contribution 0.618 0.617 -0.154 0.886 sum 1.515 -2.602 1.076 3.198 Atomic orbital electron populations 1.19757 0.91426 1.00062 0.99686 1.19931 0.94032 0.91218 1.21751 1.22031 0.82096 0.99080 1.01087 1.40123 1.05309 1.01938 1.48066 1.20069 0.91801 0.94149 1.40697 0.87069 1.25538 0.98557 0.98335 0.94350 1.69860 1.23943 1.19767 1.35339 0.85689 0.80087 0.79476 0.78537 1.18780 1.20021 1.20002 1.18228 0.94305 0.84324 1.08571 1.18905 0.92385 0.92561 1.07667 1.20204 0.97406 0.91467 1.01773 1.20453 0.92676 0.97751 1.07968 1.20312 0.96129 0.93235 1.06614 1.18727 0.93253 0.92028 1.03753 1.20859 0.92953 1.01509 1.01553 0.93887 0.93389 0.93633 0.81023 0.91188 0.88007 0.87950 0.87715 0.92506 0.93091 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 10.41 36.01 0.37 -0.62 16 2 C -0.26 -6.28 6.32 -102.61 -0.65 -6.93 16 3 C 0.09 2.38 9.82 -16.63 -0.16 2.22 16 4 N -0.29 -7.77 2.92 -59.73 -0.17 -7.95 16 5 C -0.34 -8.82 8.70 -14.92 -0.13 -8.95 16 6 H 0.11 2.73 5.67 -52.49 -0.30 2.44 16 7 C 0.04 0.99 5.43 -17.49 -0.10 0.90 16 8 N -0.86 -22.19 10.71 55.49 0.59 -21.60 16 9 Si 0.94 19.05 29.55 -169.99 -5.02 14.03 16 10 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 13 C 0.06 1.44 6.70 -83.84 -0.56 0.88 16 14 C -0.11 -2.65 6.35 -105.09 -0.67 -3.32 16 15 C -0.09 -1.90 10.10 -39.27 -0.40 -2.30 16 16 C -0.17 -3.29 10.03 -39.56 -0.40 -3.69 16 17 C -0.14 -2.86 9.65 -39.52 -0.38 -3.24 16 18 C -0.08 -1.69 5.89 -104.48 -0.62 -2.31 16 19 C -0.11 -2.19 8.70 36.00 0.31 -1.88 16 20 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.17 4.49 6.28 -52.49 -0.33 4.16 16 24 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 25 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.10 1.78 8.05 -52.48 -0.42 1.35 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.84 8.04 -51.93 -0.42 0.42 16 30 H 0.08 1.64 6.00 -51.93 -0.31 1.33 16 LS Contribution 253.62 15.07 3.82 3.82 Total: -1.00 -27.92 253.62 -7.60 -35.51 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.45 Total: 5.43 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -3.37 Total: -29.25 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.42 Total: -29.55 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.92 -7.60 -35.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261192824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.190 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds