Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34303 * 126.47276 * 2 1 4 4 N 1.37000 * 109.94308 * 179.97438 * 3 2 1 5 5 C 1.37203 * 125.09306 * 179.97438 * 4 3 2 6 6 H 1.07996 * 119.99960 * 154.33679 * 5 4 3 7 7 C 1.38854 * 119.99833 * 334.34509 * 5 4 3 8 8 N 1.31439 * 120.00025 * 359.44464 * 7 5 4 9 9 Si 1.86807 * 119.99850 * 179.44961 * 7 5 4 10 10 H 1.48501 * 109.46780 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46869 * 119.99280 * 9 7 5 12 12 H 1.48500 * 109.46780 * 239.99485 * 9 7 5 13 13 C 1.38120 * 109.81862 * 359.97438 * 4 3 2 14 14 C 1.40738 * 107.11253 * 359.72747 * 13 4 3 15 15 C 1.39473 * 119.94841 * 179.66257 * 14 13 4 16 16 C 1.37825 * 119.65589 * 0.61720 * 15 14 13 17 17 C 1.38703 * 120.36229 * 359.66367 * 16 15 14 18 18 C 1.37937 * 120.65103 * 0.03468 * 17 16 15 19 19 C 1.50699 * 120.04314 * 179.97438 * 18 17 16 20 20 H 1.09004 * 109.47016 * 90.02654 * 1 2 3 21 21 H 1.08995 * 109.47368 * 330.02914 * 1 2 3 22 22 H 1.08999 * 109.47068 * 210.02466 * 1 2 3 23 23 H 1.08002 * 125.02821 * 0.02562 * 3 2 1 24 24 H 0.96997 * 120.00006 * 180.02562 * 8 7 5 25 25 H 1.08002 * 120.17335 * 180.30247 * 15 14 13 26 26 H 1.07995 * 119.81686 * 179.67931 * 16 15 14 27 27 H 1.08004 * 119.67390 * 180.02562 * 17 16 15 28 28 H 1.08999 * 109.47096 * 263.35800 * 19 18 17 29 29 H 1.09000 * 109.47139 * 23.35839 * 19 18 17 30 30 H 1.08998 * 109.46924 * 143.35394 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0800 0.0000 4 7 3.6187 0.6902 0.0006 5 6 4.6943 1.5420 0.0002 6 1 5.6409 1.2166 0.4057 7 6 4.5657 2.8224 -0.5213 8 7 3.4166 3.2147 -1.0246 9 14 6.0259 3.9875 -0.5078 10 1 7.1942 3.3096 0.1094 11 1 6.3594 4.3792 -1.9008 12 1 5.6846 5.1997 0.2792 13 6 3.6980 -0.6887 0.0016 14 6 2.3789 -1.1793 0.0080 15 6 2.1475 -2.5547 0.0032 16 6 3.2155 -3.4259 0.0052 17 6 4.5153 -2.9417 0.0047 18 6 4.7600 -1.5842 0.0031 19 6 6.1777 -1.0731 0.0033 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3634 0.8902 0.5133 22 1 -0.3633 -0.8898 0.5142 23 1 1.9627 2.1042 0.0004 24 1 3.3269 4.1090 -1.3893 25 1 1.1367 -2.9352 0.0032 26 1 3.0394 -4.4914 0.0067 27 1 5.3439 -3.6344 0.0058 28 1 6.4786 -0.8368 1.0239 29 1 6.8397 -1.8379 -0.4028 30 1 6.2401 -0.1750 -0.6112 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261192824.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = 29.172745 kcal Electronic energy + Delta-G solvation = -14026.394059 eV Core-core repulsion = 11785.791844 eV Total energy + Delta-G solvation = -2240.602216 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84356 -37.85729 -35.48388 -33.91253 -32.01364 -29.95444 -28.70013 -27.16837 -25.58679 -22.57480 -22.27813 -20.29026 -19.07065 -17.44437 -16.59398 -16.16571 -15.86888 -15.50933 -14.96623 -14.12537 -14.06482 -13.88387 -13.71002 -13.61771 -13.25849 -12.96656 -12.91050 -12.68218 -12.33737 -12.13664 -12.09030 -11.57789 -11.35980 -10.96830 -9.94401 -8.76862 -8.64189 -8.24347 -6.20140 0.52564 1.02577 1.34709 1.39374 1.50480 2.10373 2.22857 2.93454 3.11162 3.30391 4.17013 4.26912 4.32817 4.58748 4.62733 4.76772 4.81468 4.84643 4.95374 5.03609 5.08343 5.13426 5.21720 5.35389 5.49063 5.51577 5.59989 5.85776 5.92816 6.01820 6.39461 6.52297 6.63086 7.17924 7.62175 8.47015 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.012141 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.061467 B = 2305.735862 C = 3183.857829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.266 4.266 3 C 0.054 3.946 4 N -0.313 5.313 5 C -0.366 4.366 6 H 0.116 0.884 7 C -0.006 4.006 8 N -0.889 5.889 9 Si 1.008 2.992 10 H -0.253 1.253 11 H -0.272 1.272 12 H -0.269 1.269 13 C 0.021 3.979 14 C -0.140 4.140 15 C -0.098 4.098 16 C -0.161 4.161 17 C -0.134 4.134 18 C -0.104 4.104 19 C -0.105 4.105 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.157 0.843 24 H 0.281 0.719 25 H 0.128 0.872 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -5.619 1.466 5.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.273 4.273 3 C -0.080 4.080 4 N 0.023 4.977 5 C -0.493 4.493 6 H 0.133 0.867 7 C -0.210 4.210 8 N -0.523 5.523 9 Si 0.828 3.172 10 H -0.177 1.177 11 H -0.197 1.197 12 H -0.194 1.194 13 C -0.090 4.090 14 C -0.146 4.146 15 C -0.116 4.116 16 C -0.180 4.180 17 C -0.153 4.153 18 C -0.106 4.106 19 C -0.162 4.162 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.174 0.826 24 H 0.091 0.909 25 H 0.146 0.854 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.614 -5.163 1.369 5.580 hybrid contribution 0.353 1.031 -0.188 1.106 sum 1.968 -4.131 1.182 4.726 Atomic orbital electron populations 1.19821 0.88486 1.01547 1.00688 1.20499 0.96120 0.90720 1.19923 1.22045 0.82888 0.99171 1.03864 1.40321 1.05431 1.02741 1.49225 1.20433 0.92199 0.95016 1.41613 0.86671 1.26541 1.01317 0.99547 0.93546 1.69982 1.25837 1.20307 1.36159 0.84666 0.76814 0.77127 0.78576 1.17658 1.19710 1.19379 1.18872 0.96087 0.84302 1.09703 1.19351 0.92182 0.94118 1.08929 1.20585 0.99502 0.90280 1.01271 1.20985 0.91915 0.99711 1.05361 1.20830 0.97816 0.92690 1.03971 1.19210 0.93843 0.92938 1.04610 1.20797 0.92326 1.01490 1.01573 0.92981 0.92431 0.91577 0.82573 0.90928 0.85433 0.83709 0.83947 0.92119 0.89801 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.82 10.41 71.24 0.74 -1.07 16 2 C -0.27 -12.94 6.32 -18.56 -0.12 -13.06 16 3 C 0.05 2.95 9.82 82.99 0.81 3.77 16 4 N -0.31 -17.38 2.92 -342.89 -1.00 -18.38 16 5 C -0.37 -19.71 8.70 84.00 0.73 -18.98 16 6 H 0.12 5.85 5.67 -2.91 -0.02 5.84 16 7 C -0.01 -0.30 5.43 84.90 0.46 0.16 16 8 N -0.89 -48.04 10.71 21.65 0.23 -47.80 16 9 Si 1.01 39.65 29.55 68.60 2.03 41.67 16 10 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 11 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 12 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 13 C 0.02 1.07 6.70 38.93 0.26 1.34 16 14 C -0.14 -6.79 6.35 -20.17 -0.13 -6.92 16 15 C -0.10 -3.90 10.10 22.47 0.23 -3.68 16 16 C -0.16 -5.62 10.03 22.28 0.22 -5.40 16 17 C -0.13 -4.88 9.65 22.31 0.22 -4.67 16 18 C -0.10 -4.55 5.89 -19.77 -0.12 -4.66 16 19 C -0.11 -4.01 8.70 71.24 0.62 -3.39 16 20 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 23 H 0.16 8.73 6.28 -2.91 -0.02 8.71 16 24 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 25 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 26 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 27 H 0.14 4.08 8.05 -2.91 -0.02 4.06 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.55 8.04 -2.39 -0.02 2.53 16 30 H 0.05 2.34 6.00 -2.39 -0.01 2.32 16 Total: -1.00 -62.43 253.62 6.33 -56.10 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 1.13 Total: 24.99 kcal Atomic # 6 Polarization: -60.51 SS G_CDS: 3.93 Total: -56.57 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -0.77 Total: -66.19 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.67 kcal Total: -62.43 6.33 -56.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261192824.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.274 kcal (2) G-P(sol) polarization free energy of solvation -62.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds