Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 120.00140 * 2 1 4 4 H 1.48502 * 109.46937 * 270.00203 * 3 2 1 5 5 H 1.48501 * 109.46548 * 29.99892 * 3 2 1 6 6 H 1.48496 * 109.47353 * 149.99706 * 3 2 1 7 7 C 1.37878 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00501 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47035 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.97391 * 303.73562 * 10 9 7 12 12 C 1.53183 * 109.98479 * 65.00661 * 10 9 7 13 13 C 1.45389 * 115.33688 * 211.02163 * 12 10 9 14 14 S 1.83631 * 109.65381 * 295.28862 * 13 12 10 15 15 C 1.79866 * 102.89285 * 68.95329 * 14 13 12 16 16 C 1.53782 * 113.10386 * 273.27152 * 15 14 13 17 17 C 1.51597 * 109.98897 * 182.35802 * 10 9 7 18 18 H 1.08995 * 109.48098 * 257.96416 * 17 10 9 19 19 N 1.46902 * 109.47295 * 17.98579 * 17 10 9 20 20 H 0.97001 * 120.00130 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46750 * 60.01020 * 9 7 2 22 22 H 1.08988 * 109.47634 * 300.00632 * 9 7 2 23 23 H 1.08997 * 108.31009 * 89.49627 * 12 10 9 24 24 H 1.09003 * 108.16434 * 332.43021 * 12 10 9 25 25 H 1.09002 * 109.43585 * 55.33427 * 13 12 10 26 26 H 1.08996 * 109.43750 * 175.24501 * 13 12 10 27 27 H 1.09006 * 108.77166 * 152.33400 * 15 14 13 28 28 H 1.09000 * 108.66426 * 34.13464 * 15 14 13 29 29 H 1.09004 * 108.27021 * 282.45711 * 16 15 14 30 30 H 1.08997 * 108.27322 * 165.59227 * 16 15 14 31 31 H 1.00901 * 110.99695 * 179.97438 * 19 17 10 32 32 H 1.00900 * 111.00132 * 303.95012 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 1 2.9197 -3.5753 -0.8525 12 6 3.0478 -3.6647 1.3042 13 6 4.4044 -4.1769 1.1992 14 16 4.3595 -5.9568 0.7497 15 6 3.7485 -5.9282 -0.9418 16 6 2.2132 -5.9252 -1.0288 17 6 1.5002 -4.9809 -0.0591 18 1 1.4765 -5.4295 0.9339 19 7 0.1264 -4.7470 -0.5239 20 1 -0.4850 0.8400 -0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8895 23 1 2.5098 -4.2674 2.0359 24 1 3.0961 -2.6410 1.6755 25 1 4.9431 -3.6223 0.4309 26 1 4.9124 -4.0573 2.1562 27 1 4.1275 -6.8053 -1.4665 28 1 4.1292 -5.0339 -1.4351 29 1 1.8583 -6.9388 -0.8420 30 1 1.9290 -5.6506 -2.0446 31 1 -0.3912 -5.6118 -0.5719 32 1 -0.3447 -4.0754 0.0636 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213057.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = -13.981601 kcal Electronic energy + Delta-G solvation = -13168.195943 eV Core-core repulsion = 11061.166366 eV Total energy + Delta-G solvation = -2107.029577 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.16061 -33.52812 -32.70880 -31.43241 -29.11064 -26.03341 -24.14219 -22.07362 -21.18212 -18.70628 -16.63253 -16.08987 -14.92802 -14.86912 -14.67647 -14.15674 -14.04658 -13.57119 -13.01451 -12.24928 -12.08300 -12.01827 -11.31573 -11.21647 -10.87424 -10.79045 -10.70689 -10.46355 -10.05250 -9.71490 -9.38678 -9.07253 -8.92850 -8.36640 -8.00899 -7.39292 -5.98204 -3.99136 2.04470 2.83122 3.31274 3.38130 3.40082 4.46219 4.83961 5.04108 5.19139 5.34381 5.37689 5.53733 5.57074 5.80773 5.88811 6.01354 6.03412 6.16165 6.32033 6.52147 6.59811 6.75002 6.99742 7.16931 7.70340 7.76261 7.91205 8.03564 8.09660 8.47217 9.08040 9.63783 11.12716 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037406 B = 0.009309 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.373135 B = 3007.023034 C = 3502.421354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.033 3.967 10 C -0.075 4.075 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.050 4.050 14 S -0.298 6.298 15 C -0.074 4.074 16 C -0.107 4.107 17 C 0.097 3.903 18 H 0.035 0.965 19 N -0.843 5.843 20 H 0.259 0.741 21 H 0.040 0.960 22 H 0.009 0.991 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.321 0.679 32 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -10.052 0.565 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.094 4.094 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.198 4.198 14 S -0.072 6.072 15 C -0.223 4.223 16 C -0.147 4.147 17 C -0.014 4.014 18 H 0.053 0.947 19 N -0.375 5.375 20 H 0.069 0.931 21 H 0.058 0.942 22 H 0.027 0.973 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.098 0.902 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.662 -10.543 0.528 11.978 hybrid contribution -0.135 1.589 0.156 1.602 sum 5.526 -8.954 0.683 10.544 Atomic orbital electron populations 1.69951 1.05925 1.26405 1.50946 1.24986 0.94789 0.98989 0.95556 0.86692 0.79865 0.83959 0.78058 1.20770 1.21325 1.20021 1.21254 0.92821 0.91183 1.50253 0.92959 1.19064 0.93614 0.90026 0.97739 1.21160 0.97794 0.95009 0.95428 0.92159 1.20679 0.93587 1.02959 0.99667 1.22348 1.01590 0.91416 1.04410 1.86490 1.85892 1.15376 1.19450 1.23163 0.98767 1.05374 0.95015 1.21744 0.92472 0.99271 1.01231 1.21332 0.89348 0.95754 0.94984 0.94671 1.58932 1.03268 1.14769 1.60497 0.93122 0.94170 0.97251 0.92455 0.89212 0.90162 0.88541 0.88749 0.89833 0.93064 0.90782 0.86758 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.03 8.01 -34.44 -0.28 -14.31 16 8 H 0.05 1.39 7.45 -52.49 -0.39 0.99 16 9 C 0.03 0.80 3.13 -27.88 -0.09 0.72 16 10 C -0.08 -1.48 1.82 -91.24 -0.17 -1.65 16 11 H 0.06 1.24 6.25 -51.93 -0.32 0.91 16 12 C -0.13 -2.34 4.41 -30.22 -0.13 -2.48 16 13 C -0.05 -0.78 6.07 33.58 0.20 -0.58 16 14 S -0.30 -4.48 21.55 -107.50 -2.32 -6.80 16 15 C -0.07 -1.04 5.59 37.56 0.21 -0.83 16 16 C -0.11 -1.59 5.24 -26.34 -0.14 -1.73 16 17 C 0.10 1.67 2.83 -68.43 -0.19 1.47 16 18 H 0.04 0.62 6.84 -51.93 -0.36 0.26 16 19 N -0.84 -14.53 8.13 -5.28 -0.04 -14.57 16 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.04 1.08 7.12 -51.93 -0.37 0.71 16 22 H 0.01 0.24 7.55 -51.94 -0.39 -0.15 16 23 H 0.06 1.02 6.99 -51.93 -0.36 0.65 16 24 H 0.09 1.81 6.63 -51.93 -0.34 1.47 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.09 1.14 8.14 -51.68 -0.42 0.72 16 28 H 0.08 1.21 7.06 -51.65 -0.36 0.85 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.32 4.62 9.04 -39.29 -0.36 4.27 16 32 H 0.36 6.65 6.89 -39.29 -0.27 6.38 16 LS Contribution 257.19 15.07 3.88 3.88 Total: -1.00 -28.55 257.19 -8.22 -36.77 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.77 Total: 7.73 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.68 Total: -17.85 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.69 Total: -40.09 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -2.32 Total: -6.80 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.55 -8.22 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213057.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.793 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds