Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34236 * 125.03751 * 2 1 4 4 C 1.46493 * 106.99997 * 179.97438 * 3 2 1 5 5 C 1.39624 * 134.02832 * 180.02562 * 4 3 2 6 6 C 1.36629 * 119.76383 * 179.97438 * 5 4 3 7 7 C 1.38832 * 120.52376 * 0.28383 * 6 5 4 8 8 C 1.50696 * 119.66433 * 179.72092 * 7 6 5 9 9 C 1.50701 * 109.47298 * 89.99583 * 8 7 6 10 10 H 1.07999 * 120.00053 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99960 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99987 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47049 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46984 * 120.00254 * 13 11 9 16 16 H 1.48502 * 109.47137 * 240.00296 * 13 11 9 17 17 C 1.37748 * 120.66734 * 359.43110 * 7 6 5 18 18 C 1.39121 * 119.77937 * 0.56405 * 17 7 6 19 19 N 1.36839 * 125.03479 * 179.97438 * 2 1 3 20 20 H 0.96992 * 125.06288 * 0.06105 * 19 2 1 21 21 H 1.08998 * 109.47501 * 90.02682 * 1 2 3 22 22 H 1.09002 * 109.47297 * 210.02720 * 1 2 3 23 23 H 1.09005 * 109.47036 * 330.02375 * 1 2 3 24 24 H 1.08004 * 126.50040 * 359.92789 * 3 2 1 25 25 H 1.08003 * 120.11833 * 0.02562 * 5 4 3 26 26 H 1.08002 * 119.73492 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.47178 * 210.00223 * 8 7 6 28 28 H 1.09000 * 109.47055 * 329.99714 * 8 7 6 29 29 H 0.96996 * 119.99398 * 179.97438 * 12 11 9 30 30 H 1.08005 * 120.11087 * 180.25548 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2776 1.0991 0.0000 4 6 3.6705 0.6455 0.0006 5 6 4.9041 1.2996 0.0014 6 6 6.0589 0.5694 0.0023 7 6 6.0159 -0.8182 -0.0033 8 6 7.3016 -1.6043 -0.0085 9 6 7.7324 -1.8721 1.4106 10 1 7.1351 -1.5090 2.2339 11 6 8.8890 -2.5807 1.6578 12 7 9.6166 -3.0224 0.6552 13 14 9.4226 -2.9132 3.4169 14 1 8.4384 -2.3150 4.3542 15 1 9.4939 -4.3791 3.6437 16 1 10.7595 -2.3105 3.6509 17 6 4.8098 -1.4837 0.0018 18 6 3.6215 -0.7603 0.0008 19 7 2.2925 -1.1204 0.0005 20 1 1.9623 -2.0324 0.0001 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3634 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 1.9356 2.1235 -0.0011 25 1 4.9453 2.3788 0.0020 26 1 7.0129 1.0759 0.0025 27 1 7.1465 -2.5510 -0.5260 28 1 8.0750 -1.0324 -0.5212 29 1 10.4305 -3.5206 0.8293 30 1 4.7868 -2.5635 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261213418.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = 36.868718 kcal Electronic energy + Delta-G solvation = -13280.958532 eV Core-core repulsion = 11040.690038 eV Total energy + Delta-G solvation = -2240.268493 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76091 -36.88039 -33.16322 -31.72568 -31.12261 -28.79240 -28.21267 -25.44752 -22.68872 -21.76664 -20.25345 -19.54772 -16.86309 -16.24303 -15.62789 -14.63367 -14.47256 -14.07167 -13.68759 -13.13975 -12.85542 -12.84363 -12.39239 -12.30054 -11.83542 -11.21165 -11.15653 -10.76346 -10.61618 -10.52368 -10.22959 -9.52857 -9.40955 -8.93380 -8.39967 -7.46640 -7.05614 -6.01091 -4.04823 1.76118 2.34366 3.09719 3.31054 3.38624 3.44321 3.46739 4.43428 4.67960 4.89222 5.15139 5.32781 5.40697 5.43706 5.62043 5.74430 5.88849 5.96610 6.05567 6.21364 6.48901 6.56682 6.82364 7.15334 7.24233 7.29638 7.32967 7.56379 7.83675 7.90780 7.95198 7.97503 8.36256 9.00979 9.58769 11.08371 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.049499 B = 0.006412 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.527045 B = 4365.467122 C = 4522.451086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.057 3.943 3 C -0.203 4.203 4 C -0.131 4.131 5 C -0.083 4.083 6 C -0.137 4.137 7 C -0.012 4.012 8 C 0.049 3.951 9 C -0.509 4.509 10 H 0.058 0.942 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.283 1.283 17 C -0.144 4.144 18 C 0.101 3.899 19 N -0.599 5.599 20 H 0.408 0.592 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.137 0.863 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.261 0.739 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 5.342 -1.779 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.228 4.228 4 C -0.135 4.135 5 C -0.102 4.102 6 C -0.156 4.156 7 C -0.013 4.013 8 C 0.012 3.988 9 C -0.547 4.547 10 H 0.076 0.924 11 C -0.144 4.144 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.164 4.164 18 C -0.005 4.005 19 N -0.203 5.203 20 H 0.244 0.756 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.155 0.845 25 H 0.130 0.870 26 H 0.137 0.863 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.797 5.150 -1.815 15.773 hybrid contribution 0.259 -0.716 0.992 1.250 sum -14.539 4.435 -0.823 15.222 Atomic orbital electron populations 1.20381 0.88462 1.03138 1.02539 1.20126 0.92894 0.86258 1.05795 1.21335 0.90921 0.97081 1.13509 1.19039 0.93214 0.92139 1.09119 1.20164 0.90693 0.98685 1.00630 1.20667 0.97565 0.93955 1.03383 1.20360 0.95862 0.93659 0.91466 1.18357 0.88192 0.94552 0.97709 1.21122 1.07554 1.34427 0.91586 0.92388 1.25013 0.96456 0.95735 0.97176 1.69973 1.15360 1.37607 1.30503 0.86492 0.78551 0.77904 0.84855 1.19678 1.21008 1.20912 1.19918 0.88966 0.98915 1.08646 1.18301 0.84089 0.94239 1.03841 1.41647 1.04327 1.07607 1.66690 0.75605 0.91041 0.91809 0.90187 0.84521 0.87015 0.86278 0.95412 0.95122 0.92944 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.39 36.00 0.37 -0.40 16 2 C 0.06 0.77 7.08 -81.77 -0.58 0.19 16 3 C -0.20 -3.10 10.95 -37.67 -0.41 -3.52 16 4 C -0.13 -2.43 6.37 -105.14 -0.67 -3.10 16 5 C -0.08 -1.53 10.05 -39.65 -0.40 -1.93 16 6 C -0.14 -2.82 9.62 -39.94 -0.38 -3.21 16 7 C -0.01 -0.27 5.07 -104.58 -0.53 -0.80 16 8 C 0.05 1.28 5.08 -29.04 -0.15 1.13 16 9 C -0.51 -14.48 9.09 -34.44 -0.31 -14.80 16 10 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 13 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 C -0.14 -3.00 9.71 -39.43 -0.38 -3.38 16 18 C 0.10 1.90 7.28 -83.99 -0.61 1.29 16 19 N -0.60 -8.94 6.07 -6.95 -0.04 -8.98 16 20 H 0.41 4.87 8.96 -40.82 -0.37 4.50 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 25 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 26 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 27 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.11 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 264.20 15.07 3.98 3.98 Total: -1.00 -31.66 264.20 -8.20 -39.86 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.71 Total: 1.31 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -4.15 Total: -26.99 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.69 Total: -34.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.66 -8.20 -39.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213418.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.731 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds