Wall clock time and date at job start Mon Mar 30 2020 02:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34236 * 125.03751 * 2 1 4 4 C 1.46493 * 106.99997 * 179.97438 * 3 2 1 5 5 C 1.39624 * 134.02832 * 180.02562 * 4 3 2 6 6 C 1.36629 * 119.76383 * 179.97438 * 5 4 3 7 7 C 1.38832 * 120.52376 * 0.28383 * 6 5 4 8 8 C 1.50696 * 119.66433 * 179.72092 * 7 6 5 9 9 C 1.50701 * 109.47298 * 89.99583 * 8 7 6 10 10 H 1.07999 * 120.00053 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99960 * 179.97438 * 9 8 7 12 12 N 1.31522 * 119.99987 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47049 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46984 * 120.00254 * 13 11 9 16 16 H 1.48502 * 109.47137 * 240.00296 * 13 11 9 17 17 C 1.37748 * 120.66734 * 359.43110 * 7 6 5 18 18 C 1.39121 * 119.77937 * 0.56405 * 17 7 6 19 19 N 1.36839 * 125.03479 * 179.97438 * 2 1 3 20 20 H 0.96992 * 125.06288 * 0.06105 * 19 2 1 21 21 H 1.08998 * 109.47501 * 90.02682 * 1 2 3 22 22 H 1.09002 * 109.47297 * 210.02720 * 1 2 3 23 23 H 1.09005 * 109.47036 * 330.02375 * 1 2 3 24 24 H 1.08004 * 126.50040 * 359.92789 * 3 2 1 25 25 H 1.08003 * 120.11833 * 0.02562 * 5 4 3 26 26 H 1.08002 * 119.73492 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.47178 * 210.00223 * 8 7 6 28 28 H 1.09000 * 109.47055 * 329.99714 * 8 7 6 29 29 H 0.96996 * 119.99398 * 179.97438 * 12 11 9 30 30 H 1.08005 * 120.11087 * 180.25548 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2776 1.0991 0.0000 4 6 3.6705 0.6455 0.0006 5 6 4.9041 1.2996 0.0014 6 6 6.0589 0.5694 0.0023 7 6 6.0159 -0.8182 -0.0033 8 6 7.3016 -1.6043 -0.0085 9 6 7.7324 -1.8721 1.4106 10 1 7.1351 -1.5090 2.2339 11 6 8.8890 -2.5807 1.6578 12 7 9.6166 -3.0224 0.6552 13 14 9.4226 -2.9132 3.4169 14 1 8.4384 -2.3150 4.3542 15 1 9.4939 -4.3791 3.6437 16 1 10.7595 -2.3105 3.6509 17 6 4.8098 -1.4837 0.0018 18 6 3.6215 -0.7603 0.0008 19 7 2.2925 -1.1204 0.0005 20 1 1.9623 -2.0324 0.0001 21 1 -0.3634 -0.0005 -1.0276 22 1 -0.3634 -0.8897 0.5143 23 1 -0.3633 0.8902 0.5135 24 1 1.9356 2.1235 -0.0011 25 1 4.9453 2.3788 0.0020 26 1 7.0129 1.0759 0.0025 27 1 7.1465 -2.5510 -0.5260 28 1 8.0750 -1.0324 -0.5212 29 1 10.4305 -3.5206 0.8293 30 1 4.7868 -2.5635 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261213418.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:12 Heat of formation + Delta-G solvation = 18.367661 kcal Electronic energy + Delta-G solvation = -13281.760798 eV Core-core repulsion = 11040.690038 eV Total energy + Delta-G solvation = -2241.070760 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.07901 -38.40101 -35.21385 -33.11051 -32.56482 -30.21564 -29.76154 -27.07055 -24.56927 -23.20457 -21.68423 -20.87071 -18.54385 -18.16649 -17.02553 -16.57770 -15.69912 -15.61801 -14.99907 -14.60074 -14.48196 -13.98681 -13.73115 -13.49922 -13.26241 -13.18123 -12.67609 -12.56404 -12.33252 -12.17415 -11.94654 -11.43946 -11.34718 -10.61407 -10.40697 -8.94313 -8.48012 -8.16059 -6.33717 0.33263 0.80477 1.38743 1.39187 1.53162 1.85153 2.27228 2.40126 3.09819 3.10102 3.85393 3.99410 4.30037 4.38703 4.50059 4.56008 4.64573 4.73913 4.84022 5.10086 5.11319 5.17181 5.24570 5.34572 5.39432 5.66965 5.76327 5.86847 5.97742 6.11842 6.16863 6.38480 6.78629 6.78761 7.34668 8.89172 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.049499 B = 0.006412 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.527045 B = 4365.467122 C = 4522.451086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.078 3.922 3 C -0.224 4.224 4 C -0.142 4.142 5 C -0.077 4.077 6 C -0.155 4.155 7 C -0.046 4.046 8 C 0.060 3.940 9 C -0.527 4.527 10 H 0.051 0.949 11 C 0.005 3.995 12 N -0.930 5.930 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.274 1.274 17 C -0.150 4.150 18 C 0.083 3.917 19 N -0.591 5.591 20 H 0.422 0.578 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.165 0.835 25 H 0.144 0.856 26 H 0.117 0.883 27 H 0.002 0.998 28 H 0.006 0.994 29 H 0.266 0.734 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.615 6.250 -0.748 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 C -0.249 4.249 4 C -0.146 4.146 5 C -0.095 4.095 6 C -0.174 4.174 7 C -0.048 4.048 8 C 0.023 3.977 9 C -0.565 4.565 10 H 0.070 0.930 11 C -0.193 4.193 12 N -0.570 5.570 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.199 1.199 17 C -0.170 4.170 18 C -0.024 4.024 19 N -0.196 5.196 20 H 0.260 0.740 21 H 0.108 0.892 22 H 0.098 0.902 23 H 0.118 0.882 24 H 0.183 0.817 25 H 0.161 0.839 26 H 0.135 0.865 27 H 0.020 0.980 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.551 6.049 -0.791 18.581 hybrid contribution 0.931 -0.982 0.612 1.485 sum -16.621 5.066 -0.179 17.377 Atomic orbital electron populations 1.20576 0.84429 1.04981 1.04292 1.20966 0.95123 0.84991 1.01927 1.21697 0.89090 0.99140 1.14958 1.19557 0.94884 0.92231 1.07978 1.20433 0.89946 1.00143 0.98979 1.20665 0.98649 0.93196 1.04866 1.20061 0.94828 0.94540 0.95328 1.18078 0.89768 0.93505 0.96366 1.21394 1.07974 1.34771 0.92376 0.93023 1.25928 0.96322 0.95233 1.01840 1.70091 1.15872 1.38170 1.32911 0.85374 0.78277 0.78090 0.79166 1.19167 1.20029 1.19916 1.19832 0.89607 0.98781 1.08827 1.18249 0.85061 0.94592 1.04475 1.41773 1.03036 1.09135 1.65703 0.73952 0.89155 0.90164 0.88198 0.81728 0.83858 0.86504 0.97964 0.97537 0.92518 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 10.39 71.23 0.74 -0.32 16 2 C 0.08 1.81 7.08 40.86 0.29 2.10 16 3 C -0.22 -6.09 10.95 23.51 0.26 -5.84 16 4 C -0.14 -5.05 6.37 -20.20 -0.13 -5.17 16 5 C -0.08 -2.78 10.05 22.23 0.22 -2.56 16 6 C -0.15 -6.60 9.62 22.04 0.21 -6.39 16 7 C -0.05 -2.22 5.07 -19.84 -0.10 -2.32 16 8 C 0.06 3.36 5.08 29.10 0.15 3.51 16 9 C -0.53 -31.28 9.09 25.60 0.23 -31.05 16 10 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 11 C 0.00 0.28 5.46 84.65 0.46 0.74 16 12 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 13 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 C -0.15 -6.47 9.71 22.37 0.22 -6.25 16 18 C 0.08 3.08 7.28 39.03 0.28 3.36 16 19 N -0.59 -16.28 6.07 -175.91 -1.07 -17.34 16 20 H 0.42 9.06 8.96 -92.71 -0.83 8.23 16 21 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 24 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 25 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 26 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 27 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 28 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 29 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -70.55 264.20 4.39 -66.16 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.31 Total: 10.89 kcal Atomic # 6 Polarization: -53.03 SS G_CDS: 2.84 Total: -50.19 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -0.78 Total: -74.18 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -70.55 4.39 -66.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261213418.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.532 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds