Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48498 * 109.47426 * 270.00023 * 3 2 1 5 5 H 1.48497 * 109.47085 * 30.00711 * 3 2 1 6 6 H 1.48507 * 109.46569 * 149.99918 * 3 2 1 7 7 C 1.37877 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99808 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00411 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47387 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.96484 * 53.73079 * 10 9 7 12 12 C 1.53183 * 109.98635 * 292.36531 * 10 9 7 13 13 C 1.45388 * 115.33330 * 148.98354 * 12 10 9 14 14 S 1.83629 * 109.69738 * 64.73088 * 13 12 10 15 15 C 1.79970 * 102.84317 * 291.06681 * 14 13 12 16 16 C 1.53771 * 113.13276 * 86.70160 * 15 14 13 17 17 C 1.51586 * 109.98709 * 174.99969 * 10 9 7 18 18 H 1.09005 * 109.49146 * 342.02013 * 17 10 9 19 19 N 1.46901 * 109.47901 * 102.04287 * 17 10 9 20 20 H 0.97004 * 119.99662 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46704 * 60.00257 * 9 7 2 22 22 H 1.09001 * 109.47026 * 300.00563 * 9 7 2 23 23 H 1.08997 * 108.30766 * 270.50225 * 12 10 9 24 24 H 1.08999 * 108.31060 * 27.65047 * 12 10 9 25 25 H 1.09000 * 109.42941 * 184.79823 * 13 12 10 26 26 H 1.09003 * 109.43202 * 304.70136 * 13 12 10 27 27 H 1.09001 * 108.75092 * 325.76164 * 15 14 13 28 28 H 1.09002 * 108.75334 * 207.64737 * 15 14 13 29 29 H 1.09001 * 108.27461 * 77.53469 * 16 15 14 30 30 H 1.08997 * 108.27708 * 194.59247 * 16 15 14 31 31 H 1.00898 * 110.99969 * 172.38284 * 19 17 10 32 32 H 1.00905 * 111.00070 * 296.33328 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 1 2.9476 -3.5513 0.8255 12 6 3.0016 -3.7042 -1.3318 13 6 4.3612 -4.2141 -1.2588 14 16 4.3339 -5.9799 -0.7558 15 6 3.7812 -5.9000 0.9550 16 6 2.2500 -5.8934 1.0956 17 6 1.5030 -4.9782 0.1236 18 1 0.4962 -4.7940 0.4985 19 7 1.4247 -5.6226 -1.1942 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6245 -2.5571 0.8896 23 1 2.4387 -4.3282 -2.0260 24 1 3.0392 -2.6928 -1.7364 25 1 4.8357 -4.1226 -2.2359 26 1 4.9259 -3.6375 -0.5261 27 1 4.1787 -4.9925 1.4096 28 1 4.1787 -6.7611 1.4923 29 1 1.8892 -6.9119 0.9517 30 1 2.0012 -5.5850 2.1109 31 1 1.0462 -6.5549 -1.1188 32 1 0.8850 -5.0642 -1.8383 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267243.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -21.785750 kcal Electronic energy + Delta-G solvation = -13226.427204 eV Core-core repulsion = 11119.059214 eV Total energy + Delta-G solvation = -2107.367991 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.72315 -35.27678 -34.02713 -32.26774 -31.46402 -27.63916 -25.69765 -23.78609 -22.63114 -19.81654 -18.50567 -17.28639 -17.04423 -16.59453 -15.86403 -15.71425 -15.08487 -14.64065 -14.36918 -14.18835 -13.77843 -13.17952 -12.96845 -12.78396 -12.65627 -12.50679 -12.30733 -11.90919 -11.51397 -11.21769 -11.02886 -10.83000 -10.53429 -10.33006 -9.35208 -8.19536 -8.03849 -6.28161 1.10639 1.38288 1.38507 1.49288 1.86746 2.39892 3.13998 3.74253 3.84024 3.96935 4.11024 4.32194 4.39721 4.43156 4.64407 4.77857 4.84880 4.91724 5.06150 5.12146 5.21139 5.36314 5.47828 5.51794 5.58848 5.83948 5.96993 6.26781 6.41807 6.83753 6.88267 7.40041 8.92052 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.043125 B = 0.008821 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.125703 B = 3173.512362 C = 3445.818079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.066 4.066 11 H 0.048 0.952 12 C -0.124 4.124 13 C -0.047 4.047 14 S -0.253 6.253 15 C -0.078 4.078 16 C -0.101 4.101 17 C 0.097 3.903 18 H 0.020 0.980 19 N -0.812 5.812 20 H 0.261 0.739 21 H -0.009 1.009 22 H -0.017 1.017 23 H 0.109 0.891 24 H 0.039 0.961 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.339 0.661 32 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 -11.329 -0.232 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.002 3.998 10 C -0.085 4.085 11 H 0.066 0.934 12 C -0.163 4.163 13 C -0.195 4.195 14 S -0.027 6.027 15 C -0.227 4.227 16 C -0.141 4.141 17 C -0.015 4.015 18 H 0.038 0.962 19 N -0.344 5.344 20 H 0.070 0.930 21 H 0.010 0.990 22 H 0.001 0.999 23 H 0.127 0.873 24 H 0.058 0.942 25 H 0.123 0.877 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.004 -12.062 -0.832 13.973 hybrid contribution -1.415 2.328 1.054 2.921 sum 5.589 -9.735 0.222 11.228 Atomic orbital electron populations 1.70090 1.07659 1.27499 1.52196 1.25901 0.95672 1.03035 0.95146 0.85567 0.78736 0.79074 0.78426 1.19880 1.20958 1.18934 1.21584 0.93216 0.92131 1.49470 0.92539 1.19034 0.93777 0.92880 0.94129 1.20939 0.96982 0.93403 0.97190 0.93381 1.20519 0.95607 1.00707 0.99468 1.22117 0.99804 0.93320 1.04258 1.86174 1.86438 1.13671 1.16407 1.23183 0.98349 1.05447 0.95720 1.21767 0.93753 1.00126 0.98489 1.21042 0.96292 0.93898 0.90234 0.96236 1.59324 1.59812 1.06218 1.09072 0.92975 0.99032 0.99899 0.87297 0.94232 0.87712 0.91878 0.91272 0.86878 0.90588 0.91614 0.84611 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.53 -29.41 8.07 25.60 0.21 -29.21 16 8 H 0.06 3.07 7.62 -2.91 -0.02 3.05 16 9 C 0.04 2.00 4.20 29.85 0.13 2.13 16 10 C -0.07 -2.63 1.79 -11.20 -0.02 -2.65 16 11 H 0.05 1.98 6.25 -2.38 -0.01 1.96 16 12 C -0.12 -4.54 4.34 28.33 0.12 -4.42 16 13 C -0.05 -1.49 6.06 69.66 0.42 -1.07 16 14 S -0.25 -7.25 20.54 -56.49 -1.16 -8.41 16 15 C -0.08 -2.06 5.59 72.24 0.40 -1.65 16 16 C -0.10 -2.71 5.29 30.85 0.16 -2.55 16 17 C 0.10 3.16 3.17 44.44 0.14 3.30 16 18 H 0.02 0.71 7.62 -2.38 -0.02 0.69 16 19 N -0.81 -22.63 5.70 -170.64 -0.97 -23.60 16 20 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 21 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 22 H -0.02 -0.98 8.04 -2.39 -0.02 -1.00 16 23 H 0.11 3.80 4.83 -2.39 -0.01 3.79 16 24 H 0.04 1.67 6.84 -2.39 -0.02 1.66 16 25 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.07 1.94 7.07 -2.53 -0.02 1.92 16 28 H 0.11 2.44 8.14 -2.53 -0.02 2.42 16 29 H 0.08 1.75 7.89 -2.39 -0.02 1.74 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.34 7.88 8.77 -89.70 -0.79 7.10 16 32 H 0.34 9.70 8.09 -89.69 -0.73 8.97 16 Total: -1.00 -61.67 256.38 1.81 -59.86 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.40 Total: 17.77 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 2.03 Total: -35.66 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -0.69 Total: -79.92 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -7.25 SS G_CDS: -1.16 Total: -8.41 kcal Total: -61.67 1.81 -59.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267243.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.076 kcal (2) G-P(sol) polarization free energy of solvation -61.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds