Wall clock time and date at job start Mon Mar 30 2020 03:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46696 * 92.06263 * 3 2 1 5 5 C 1.53001 * 109.46862 * 212.06240 * 3 2 1 6 6 N 1.46504 * 109.46961 * 332.06472 * 3 2 1 7 7 C 1.39680 * 119.99387 * 155.00455 * 6 3 2 8 8 C 1.39329 * 119.95543 * 359.97438 * 7 6 3 9 9 C 1.38484 * 120.42635 * 180.02562 * 8 7 6 10 10 C 1.37691 * 120.32447 * 0.25938 * 9 8 7 11 11 C 1.40752 * 119.88707 * 359.45163 * 10 9 8 12 12 C 1.41412 * 120.20478 * 180.27345 * 11 10 9 13 13 H 1.08000 * 120.00187 * 204.64344 * 12 11 10 14 14 C 1.39926 * 120.00070 * 24.63317 * 12 11 10 15 15 N 1.30828 * 120.00037 * 17.72791 * 14 12 11 16 16 Si 1.86798 * 120.00135 * 197.71845 * 14 12 11 17 17 H 1.48509 * 109.46976 * 90.00467 * 16 14 12 18 18 H 1.48495 * 109.47411 * 210.00234 * 16 14 12 19 19 H 1.48503 * 109.47283 * 330.00668 * 16 14 12 20 20 C 1.38281 * 119.94907 * 180.02562 * 7 6 3 21 21 H 4.18742 * 15.03909 * 0.02562 * 4 2 1 22 22 H 1.08998 * 109.46888 * 179.97438 * 5 3 2 23 23 H 1.09002 * 109.46849 * 300.00468 * 5 3 2 24 24 H 1.09002 * 109.46729 * 60.00276 * 5 3 2 25 25 H 0.96996 * 119.99929 * 334.99405 * 6 3 2 26 26 H 1.08000 * 119.79248 * 0.03185 * 8 7 6 27 27 H 1.07993 * 119.84157 * 179.97438 * 9 8 7 28 28 H 1.07991 * 120.05580 * 179.71947 * 10 9 8 29 29 H 0.97001 * 120.00359 * 179.97438 * 15 14 12 30 30 H 1.08004 * 120.16173 * 359.94475 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0093 0.0378 -1.0270 5 6 3.1555 1.2234 0.7658 6 7 3.1349 -1.2194 0.6471 7 6 4.4016 -1.7171 0.3327 8 6 5.1991 -1.0527 -0.5968 9 6 6.4563 -1.5378 -0.9161 10 6 6.9300 -2.6860 -0.3219 11 6 6.1381 -3.3645 0.6234 12 6 6.6204 -4.5412 1.2421 13 1 5.9254 -5.2673 1.6371 14 6 7.9980 -4.7647 1.3423 15 7 8.8347 -3.7700 1.1933 16 14 8.6426 -6.4833 1.6892 17 1 8.8721 -7.1943 0.4057 18 1 9.9209 -6.3906 2.4391 19 1 7.6471 -7.2314 2.4984 20 6 4.8619 -2.8691 0.9436 21 1 -1.0500 0.0005 0.0001 22 1 4.2455 1.2236 0.7661 23 1 2.7916 2.1311 0.2843 24 1 2.7921 1.1861 1.7928 25 1 2.5790 -1.6815 1.2939 26 1 4.8346 -0.1536 -1.0712 27 1 7.0663 -1.0156 -1.6382 28 1 7.9092 -3.0629 -0.5776 29 1 9.7897 -3.9249 1.2631 30 1 4.2446 -3.3849 1.6643 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306250085.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:42 Heat of formation + Delta-G solvation = 54.370529 kcal Electronic energy + Delta-G solvation = -13268.761487 eV Core-core repulsion = 11029.251929 eV Total energy + Delta-G solvation = -2239.509558 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85237 -37.60087 -35.38476 -33.58031 -31.77533 -31.19621 -28.66322 -27.11883 -24.58372 -22.76312 -21.99644 -19.28118 -19.12987 -17.42716 -16.90551 -16.50094 -16.16304 -15.28378 -14.87833 -14.55007 -14.36383 -13.93985 -13.47415 -13.13567 -13.04294 -12.76128 -12.53886 -12.49735 -12.12245 -11.79286 -11.43291 -11.37375 -11.18206 -11.01805 -10.48417 -9.33823 -8.60577 -7.99747 -6.32364 1.04930 1.33598 1.39850 1.52838 1.58581 1.64721 1.87370 2.23563 2.80616 2.97934 3.38849 3.85481 4.20401 4.37234 4.49518 4.70700 4.73338 4.87299 5.05365 5.13853 5.17063 5.22607 5.32054 5.41393 5.57875 5.92572 6.02035 6.20168 6.30742 6.59715 6.64338 6.88225 6.97550 7.02683 7.21824 8.37936 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.056176 B = 0.006382 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.310690 B = 4386.507336 C = 4684.132155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.236 4.236 3 C 0.260 3.740 4 H 0.091 0.909 5 C -0.154 4.154 6 N -0.748 5.748 7 C 0.235 3.765 8 C -0.303 4.303 9 C -0.073 4.073 10 C -0.231 4.231 11 C 0.112 3.888 12 C -0.503 4.503 13 H 0.071 0.929 14 C 0.037 3.963 15 N -0.823 5.823 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.311 4.311 21 H 0.256 0.744 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.394 0.606 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.287 0.713 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 5.294 -1.466 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.236 4.236 3 C 0.155 3.845 4 H 0.108 0.892 5 C -0.213 4.213 6 N -0.380 5.380 7 C 0.134 3.866 8 C -0.325 4.325 9 C -0.092 4.092 10 C -0.252 4.252 11 C 0.109 3.891 12 C -0.533 4.533 13 H 0.089 0.911 14 C -0.178 4.178 15 N -0.449 5.449 16 Si 0.803 3.197 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.184 1.184 20 C -0.335 4.335 21 H 0.272 0.728 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.228 0.772 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.769 5.536 -1.565 10.488 hybrid contribution 0.210 -0.896 0.504 1.049 sum -8.560 4.640 -1.061 9.794 Atomic orbital electron populations 1.25807 0.96562 0.97169 0.98539 1.23353 0.94705 1.03050 1.02538 1.17624 0.83443 0.85654 0.97755 0.89164 1.22171 1.01541 0.96960 1.00619 1.44554 1.15641 1.28882 1.48912 1.17499 0.84766 0.91598 0.92715 1.20209 0.97290 1.05788 1.09260 1.20744 0.95135 0.95374 0.97970 1.21128 1.01498 0.99974 1.02610 1.17705 0.90814 0.91645 0.88899 1.19807 0.92728 1.05063 1.35685 0.91074 1.26749 0.96660 1.02356 0.92047 1.69913 1.04703 1.33919 1.36333 0.85209 0.78086 0.77080 0.79307 1.18659 1.19105 1.18367 1.20509 1.00629 1.01586 1.10813 0.72753 0.92403 0.89852 0.92482 0.77190 0.86508 0.87126 0.88494 0.90227 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 19.25 74.32 1.43 -1.91 16 2 C -0.24 -6.24 12.75 31.13 0.40 -5.85 16 3 C 0.26 7.79 2.71 43.19 0.12 7.91 16 4 H 0.09 2.76 6.47 -2.39 -0.02 2.75 16 5 C -0.15 -4.11 9.38 71.98 0.67 -3.44 16 6 N -0.75 -27.23 5.23 -327.75 -1.71 -28.94 16 7 C 0.23 10.62 6.63 38.16 0.25 10.87 16 8 C -0.30 -13.44 8.86 22.59 0.20 -13.24 16 9 C -0.07 -3.53 10.02 22.20 0.22 -3.30 16 10 C -0.23 -12.75 8.69 22.75 0.20 -12.56 16 11 C 0.11 6.38 5.57 -21.31 -0.12 6.26 16 12 C -0.50 -28.41 9.05 23.46 0.21 -28.19 16 13 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 14 C 0.04 1.93 5.14 85.25 0.44 2.36 16 15 N -0.82 -44.49 10.96 21.82 0.24 -44.25 16 16 Si 0.98 39.39 29.59 68.60 2.03 41.42 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 C -0.31 -16.10 9.63 22.86 0.22 -15.88 16 21 H 0.26 2.76 7.80 -4.42 -0.03 2.73 16 22 H 0.06 1.72 7.70 -2.39 -0.02 1.71 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.39 13.57 8.59 -92.71 -0.80 12.78 16 26 H 0.12 4.44 6.08 -2.91 -0.02 4.42 16 27 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.10 5.57 6.16 -2.92 -0.02 5.55 16 29 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 30 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -62.88 266.15 5.14 -57.74 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.34 Total: 31.00 kcal Atomic # 6 Polarization: -61.21 SS G_CDS: 4.24 Total: -56.97 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.47 Total: -73.18 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -62.88 5.14 -57.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306250085.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.106 kcal (2) G-P(sol) polarization free energy of solvation -62.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds