Wall clock time and date at job start Mon Mar 30 2020 02:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00087 * 2 1 4 4 C 1.50700 * 119.99861 * 359.97094 * 3 2 1 5 5 C 1.47206 * 109.47048 * 85.00474 * 4 3 2 6 6 N 4.04676 * 80.27813 * 37.86907 * 2 1 3 7 7 C 1.38217 * 120.00132 * 180.02562 * 3 2 1 8 8 C 1.38256 * 120.00087 * 359.92319 * 7 3 2 9 9 C 1.38215 * 119.99734 * 0.05278 * 8 7 3 10 10 C 1.38220 * 120.00215 * 179.97438 * 2 1 3 11 11 C 1.50696 * 120.00025 * 0.02562 * 10 2 1 12 12 C 1.50698 * 109.47141 * 84.97591 * 11 10 2 13 13 H 1.08001 * 120.00178 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00054 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99756 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47069 * 89.99936 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00364 * 16 14 12 19 19 H 1.48506 * 109.47005 * 330.00038 * 16 14 12 20 20 H 1.09001 * 109.47294 * 270.02134 * 1 2 3 21 21 H 1.09001 * 109.47215 * 30.02474 * 1 2 3 22 22 H 1.09005 * 109.46889 * 150.02650 * 1 2 3 23 23 H 1.08998 * 109.47465 * 205.00377 * 4 3 2 24 24 H 1.08994 * 109.47426 * 325.00363 * 4 3 2 25 25 H 1.08001 * 119.99701 * 179.97438 * 7 3 2 26 26 H 1.07995 * 120.00047 * 180.32212 * 8 7 3 27 27 H 1.08000 * 119.99306 * 179.97438 * 9 8 7 28 28 H 1.08999 * 109.47591 * 204.98203 * 11 10 2 29 29 H 1.09009 * 109.47039 * 324.97823 * 11 10 2 30 30 H 0.97000 * 119.99541 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 1.4447 2.5024 -0.0007 5 6 1.0941 2.8673 1.3817 6 7 0.8236 3.1487 2.4485 7 6 3.5804 1.1973 -0.0005 8 6 4.2717 0.0000 0.0005 9 6 3.5806 -1.1970 0.0010 10 6 2.1981 -1.1970 0.0005 11 6 1.4447 -2.5021 0.0005 12 6 1.0863 -2.8752 -1.4149 13 1 1.3756 -2.2319 -2.2327 14 6 0.3900 -4.0385 -1.6659 15 7 0.0382 -4.8222 -0.6701 16 14 -0.0536 -4.5014 -3.4204 17 1 1.0371 -5.3210 -4.0069 18 1 -1.3160 -5.2833 -3.4220 19 1 -0.2344 -3.2678 -4.2272 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8903 -0.5135 23 1 2.0697 3.2827 -0.4349 24 1 0.5343 2.3960 -0.5904 25 1 4.1204 2.1327 -0.0010 26 1 5.3517 0.0000 0.0054 27 1 4.1207 -2.1322 0.0015 28 1 2.0695 -3.2824 0.4350 29 1 0.5339 -2.3958 0.5900 30 1 -0.4513 -5.6407 -0.8468 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306607310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:24 Heat of formation + Delta-G solvation = 29.518531 kcal Electronic energy + Delta-G solvation = -13443.399328 eV Core-core repulsion = 11202.812106 eV Total energy + Delta-G solvation = -2240.587222 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.31907 -36.46665 -33.82387 -32.93358 -31.85480 -28.60134 -26.93353 -25.98898 -23.25590 -20.68388 -19.95362 -17.37275 -16.37439 -15.71541 -15.51026 -14.69678 -14.32210 -13.72801 -13.39951 -13.03134 -12.58385 -12.43861 -12.13726 -11.99932 -11.78254 -11.63071 -11.41212 -11.10422 -10.94266 -10.62392 -10.45861 -10.20665 -9.56239 -9.43826 -8.46021 -8.15612 -7.78323 -6.08033 -4.12177 1.80185 2.03001 2.89980 2.92508 3.27617 3.34552 3.37614 4.07957 4.38153 4.54520 5.02750 5.13320 5.26677 5.39179 5.52117 5.55338 5.75273 5.95720 6.12586 6.24472 6.31626 6.44240 6.71817 6.86850 6.95055 7.11366 7.20872 7.46960 7.63792 7.71044 7.79558 7.88069 8.27580 8.93507 9.51903 11.01694 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.007821 C = 0.007219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.349053 B = 3579.228796 C = 3877.851316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.105 4.105 4 C 0.017 3.983 5 C 0.218 3.782 6 N -0.446 5.446 7 C -0.131 4.131 8 C -0.129 4.129 9 C -0.116 4.116 10 C -0.035 4.035 11 C 0.047 3.953 12 C -0.510 4.510 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.095 0.905 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 10.825 -1.541 11.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.071 4.071 3 C -0.107 4.107 4 C -0.023 4.023 5 C -0.099 4.099 6 N -0.123 5.123 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.134 4.134 10 C -0.035 4.035 11 C 0.010 3.990 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.114 0.886 23 H 0.130 0.870 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.636 11.093 0.103 11.674 hybrid contribution -0.010 -0.557 -1.376 1.484 sum 3.626 10.536 -1.272 11.215 Atomic orbital electron populations 1.20939 0.91525 1.03731 1.01688 1.19639 0.96092 0.91800 0.99540 1.19135 0.93483 0.92471 1.05587 1.18181 1.02457 0.96453 0.85213 1.29144 0.92940 0.92723 0.95121 1.81170 1.09436 1.09642 1.12100 1.20720 0.93043 0.97721 1.03453 1.20980 0.99100 0.92662 1.01977 1.21154 0.94332 0.97613 1.00289 1.20574 0.93528 0.96752 0.92619 1.18379 0.95053 0.87722 0.97834 1.21009 1.35677 1.06315 0.91794 0.92402 1.25009 0.95817 0.96316 0.97116 1.69956 1.39201 1.13177 1.30846 0.86563 0.77905 0.78628 0.84789 1.20615 1.21194 1.19737 0.92240 0.92562 0.88578 0.87027 0.86409 0.86871 0.86903 0.86383 0.95528 0.94912 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.79 36.00 0.32 -1.79 16 2 C -0.07 -1.28 5.88 -104.63 -0.62 -1.90 16 3 C -0.11 -1.57 5.09 -104.62 -0.53 -2.10 16 4 C 0.02 0.18 5.34 -30.67 -0.16 0.02 16 5 C 0.22 2.99 15.40 -20.76 -0.32 2.67 16 6 N -0.45 -7.32 18.54 42.15 0.78 -6.54 16 7 C -0.13 -1.87 9.68 -39.58 -0.38 -2.25 16 8 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 9 C -0.12 -2.15 9.68 -39.58 -0.38 -2.54 16 10 C -0.03 -0.72 5.07 -104.62 -0.53 -1.25 16 11 C 0.05 1.16 4.42 -29.04 -0.13 1.03 16 12 C -0.51 -13.56 8.32 -34.44 -0.29 -13.85 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.06 0.77 6.03 -51.93 -0.31 0.46 16 22 H 0.10 1.93 6.16 -51.93 -0.32 1.61 16 23 H 0.11 0.84 8.05 -51.93 -0.42 0.42 16 24 H 0.12 1.10 6.16 -51.93 -0.32 0.78 16 25 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.03 0.70 8.05 -51.93 -0.42 0.28 16 29 H 0.03 0.85 6.99 -51.92 -0.36 0.48 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 265.67 15.07 4.00 4.00 Total: -1.00 -30.13 265.67 -6.40 -36.53 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -3.38 Total: -2.04 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -3.52 Total: -22.83 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 1.52 Total: -31.48 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.13 -6.40 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306607310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.051 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds