Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00087 * 2 1 4 4 C 1.50700 * 119.99861 * 359.97094 * 3 2 1 5 5 C 1.47206 * 109.47048 * 85.00474 * 4 3 2 6 6 N 4.04676 * 80.27813 * 37.86907 * 2 1 3 7 7 C 1.38217 * 120.00132 * 180.02562 * 3 2 1 8 8 C 1.38256 * 120.00087 * 359.92319 * 7 3 2 9 9 C 1.38215 * 119.99734 * 0.05278 * 8 7 3 10 10 C 1.38220 * 120.00215 * 179.97438 * 2 1 3 11 11 C 1.50696 * 120.00025 * 0.02562 * 10 2 1 12 12 C 1.50698 * 109.47141 * 84.97591 * 11 10 2 13 13 H 1.08001 * 120.00178 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00054 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99756 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99922 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47069 * 89.99936 * 16 14 12 18 18 H 1.48497 * 109.46950 * 210.00364 * 16 14 12 19 19 H 1.48506 * 109.47005 * 330.00038 * 16 14 12 20 20 H 1.09001 * 109.47294 * 270.02134 * 1 2 3 21 21 H 1.09001 * 109.47215 * 30.02474 * 1 2 3 22 22 H 1.09005 * 109.46889 * 150.02650 * 1 2 3 23 23 H 1.08998 * 109.47465 * 205.00377 * 4 3 2 24 24 H 1.08994 * 109.47426 * 325.00363 * 4 3 2 25 25 H 1.08001 * 119.99701 * 179.97438 * 7 3 2 26 26 H 1.07995 * 120.00047 * 180.32212 * 8 7 3 27 27 H 1.08000 * 119.99306 * 179.97438 * 9 8 7 28 28 H 1.08999 * 109.47591 * 204.98203 * 11 10 2 29 29 H 1.09009 * 109.47039 * 324.97823 * 11 10 2 30 30 H 0.97000 * 119.99541 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 1.4447 2.5024 -0.0007 5 6 1.0941 2.8673 1.3817 6 7 0.8236 3.1487 2.4485 7 6 3.5804 1.1973 -0.0005 8 6 4.2717 0.0000 0.0005 9 6 3.5806 -1.1970 0.0010 10 6 2.1981 -1.1970 0.0005 11 6 1.4447 -2.5021 0.0005 12 6 1.0863 -2.8752 -1.4149 13 1 1.3756 -2.2319 -2.2327 14 6 0.3900 -4.0385 -1.6659 15 7 0.0382 -4.8222 -0.6701 16 14 -0.0536 -4.5014 -3.4204 17 1 1.0371 -5.3210 -4.0069 18 1 -1.3160 -5.2833 -3.4220 19 1 -0.2344 -3.2678 -4.2272 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8903 -0.5135 23 1 2.0697 3.2827 -0.4349 24 1 0.5343 2.3960 -0.5904 25 1 4.1204 2.1327 -0.0010 26 1 5.3517 0.0000 0.0054 27 1 4.1207 -2.1322 0.0015 28 1 2.0695 -3.2824 0.4350 29 1 0.5339 -2.3958 0.5900 30 1 -0.4513 -5.6407 -0.8468 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306607310.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = 12.882267 kcal Electronic energy + Delta-G solvation = -13444.120730 eV Core-core repulsion = 11202.812106 eV Total energy + Delta-G solvation = -2241.308624 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.61489 -37.61744 -35.60090 -34.18565 -33.54900 -30.08473 -28.42918 -27.35241 -25.12569 -21.99343 -21.39029 -18.47771 -18.40673 -16.95794 -16.83688 -16.41399 -15.66211 -14.90892 -14.78612 -14.47306 -14.08493 -13.85894 -13.62371 -13.36630 -13.19127 -13.03688 -12.90127 -12.67897 -12.51964 -12.21579 -12.11838 -11.54670 -11.47958 -11.16498 -10.57789 -9.45050 -9.22554 -8.16947 -6.29636 0.51623 0.70582 1.42291 1.42544 1.54049 1.86104 1.88551 2.41908 2.91119 3.14093 3.41143 3.94836 4.12438 4.24929 4.31965 4.46301 4.62798 4.77201 4.83995 4.95027 5.01193 5.09563 5.27575 5.30737 5.46137 5.58034 5.71082 5.74060 5.84892 6.15427 6.17403 6.34212 6.67302 6.83565 7.38794 8.92386 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.007821 C = 0.007219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.349053 B = 3579.228796 C = 3877.851316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.088 4.088 3 C -0.097 4.097 4 C 0.022 3.978 5 C 0.241 3.759 6 N -0.501 5.501 7 C -0.117 4.117 8 C -0.125 4.125 9 C -0.136 4.136 10 C -0.075 4.075 11 C 0.058 3.942 12 C -0.515 4.515 13 H 0.057 0.943 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.260 1.260 20 H 0.053 0.947 21 H 0.095 0.905 22 H 0.056 0.944 23 H 0.163 0.837 24 H 0.140 0.860 25 H 0.161 0.839 26 H 0.145 0.855 27 H 0.106 0.894 28 H -0.008 1.008 29 H 0.005 0.995 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.221 13.764 -3.305 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.088 4.088 3 C -0.099 4.099 4 C -0.017 4.017 5 C -0.075 4.075 6 N -0.179 5.179 7 C -0.134 4.134 8 C -0.143 4.143 9 C -0.155 4.155 10 C -0.075 4.075 11 C 0.021 3.979 12 C -0.553 4.553 13 H 0.076 0.924 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.184 1.184 20 H 0.071 0.929 21 H 0.114 0.886 22 H 0.075 0.925 23 H 0.180 0.820 24 H 0.157 0.843 25 H 0.179 0.821 26 H 0.163 0.837 27 H 0.124 0.876 28 H 0.010 0.990 29 H 0.024 0.976 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.714 14.044 -1.663 14.907 hybrid contribution -0.273 -1.420 -0.791 1.648 sum 4.441 12.624 -2.454 13.605 Atomic orbital electron populations 1.20868 0.91532 1.03696 1.01297 1.19781 0.96392 0.92329 1.00280 1.19452 0.94192 0.92773 1.03464 1.18482 1.03938 0.95462 0.83841 1.29607 0.91440 0.91251 0.95246 1.81211 1.11324 1.11528 1.13839 1.21305 0.92899 0.99020 1.00199 1.21330 1.00758 0.91766 1.00450 1.21195 0.93622 0.98990 1.01650 1.20303 0.94519 0.95767 0.96903 1.18076 0.93776 0.89584 0.96441 1.21300 1.35098 1.06246 0.92666 0.92428 1.25919 0.95777 0.96315 1.01447 1.70095 1.40311 1.13759 1.33240 0.85481 0.77612 0.78632 0.79590 1.20024 1.20880 1.18425 0.92873 0.88641 0.92461 0.81958 0.84267 0.82098 0.83711 0.87555 0.99009 0.97642 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.79 71.23 0.63 -3.40 16 2 C -0.09 -3.11 5.88 -19.87 -0.12 -3.23 16 3 C -0.10 -2.52 5.09 -19.87 -0.10 -2.62 16 4 C 0.02 0.35 5.34 28.04 0.15 0.50 16 5 C 0.24 5.75 15.40 89.44 1.38 7.13 16 6 N -0.50 -15.46 18.54 20.01 0.37 -15.09 16 7 C -0.12 -2.73 9.68 22.27 0.22 -2.51 16 8 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 9 C -0.14 -5.10 9.68 22.27 0.22 -4.89 16 10 C -0.07 -3.21 5.07 -19.87 -0.10 -3.31 16 11 C 0.06 3.08 4.42 29.10 0.13 3.21 16 12 C -0.52 -28.57 8.32 25.60 0.21 -28.36 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 14 C 0.00 0.18 5.46 84.66 0.46 0.64 16 15 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 16 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 20 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.10 2.39 6.03 -2.39 -0.01 2.38 16 22 H 0.06 2.40 6.16 -2.38 -0.01 2.38 16 23 H 0.16 1.17 8.05 -2.39 -0.02 1.15 16 24 H 0.14 1.80 6.16 -2.39 -0.01 1.78 16 25 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 26 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 27 H 0.11 4.05 8.06 -2.91 -0.02 4.03 16 28 H -0.01 -0.49 8.05 -2.39 -0.02 -0.51 16 29 H 0.01 0.30 6.99 -2.38 -0.02 0.29 16 30 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -70.42 265.67 7.11 -63.31 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.14 Total: 2.30 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 3.29 Total: -40.11 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: 0.66 Total: -70.94 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.42 7.11 -63.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306607310.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.191 kcal (2) G-P(sol) polarization free energy of solvation -70.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds