Wall clock time and date at job start Mon Mar 30 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47361 * 2 1 4 4 H 1.09003 * 109.47608 * 305.00056 * 3 2 1 5 5 C 1.47200 * 109.47288 * 65.00310 * 3 2 1 6 6 N 3.43543 * 86.99977 * 40.50838 * 2 1 3 7 7 C 1.50701 * 109.47216 * 184.99740 * 3 2 1 8 8 C 1.38653 * 119.87917 * 299.73429 * 7 3 2 9 9 C 1.38616 * 120.50202 * 179.72084 * 8 7 3 10 10 C 1.37630 * 120.24773 * 0.54730 * 9 8 7 11 11 C 1.40701 * 119.74752 * 359.72764 * 10 9 8 12 12 C 1.41393 * 120.24685 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00125 * 24.37049 * 12 11 10 14 14 C 1.39946 * 119.99744 * 204.37601 * 12 11 10 15 15 N 1.30818 * 120.00408 * 17.85273 * 14 12 11 16 16 Si 1.86799 * 119.99811 * 197.86160 * 14 12 11 17 17 H 1.48496 * 109.47545 * 89.99290 * 16 14 12 18 18 H 1.48502 * 109.47409 * 209.99609 * 16 14 12 19 19 H 1.48505 * 109.47274 * 329.99708 * 16 14 12 20 20 C 1.37602 * 119.87530 * 120.00163 * 7 3 2 21 21 H 1.09008 * 109.46818 * 59.99472 * 1 2 3 22 22 H 1.08992 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46621 * 300.00145 * 1 2 3 24 24 H 1.09006 * 109.46798 * 239.99837 * 2 1 3 25 25 H 1.08999 * 109.46739 * 120.00511 * 2 1 3 26 26 H 1.08001 * 119.74728 * 359.97438 * 8 7 3 27 27 H 1.08001 * 119.87409 * 180.25294 * 9 8 7 28 28 H 1.08000 * 120.12975 * 179.70384 * 10 9 8 29 29 H 0.97007 * 120.00202 * 179.97438 * 15 14 12 30 30 H 1.08000 * 120.12526 * 0.02562 * 20 7 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6508 2.1006 1.2578 6 7 1.3502 2.6084 2.2285 7 6 3.5420 1.4442 -0.1238 8 6 4.3154 0.8186 0.8422 9 6 5.6976 0.8074 0.7381 10 6 6.3181 1.4284 -0.3219 11 6 5.5437 2.0713 -1.3051 12 6 6.1702 2.7120 -2.3988 13 1 7.1559 2.4028 -2.7135 14 6 5.5129 3.7471 -3.0734 15 7 4.5034 4.3584 -2.5090 16 14 6.0769 4.2556 -4.7801 17 1 5.3463 3.4613 -5.8001 18 1 5.7975 5.6998 -4.9840 19 1 7.5354 4.0100 -4.9131 20 6 4.1409 2.0714 -1.1921 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.8370 0.3329 1.6798 27 1 6.2900 0.3137 1.4942 28 1 7.3954 1.4226 -0.3985 29 1 4.0481 5.0761 -2.9765 30 1 3.5368 2.5621 -1.9409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306717633.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:29 Heat of formation + Delta-G solvation = 21.750010 kcal Electronic energy + Delta-G solvation = -13488.884052 eV Core-core repulsion = 11247.959962 eV Total energy + Delta-G solvation = -2240.924090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.36613 -36.33173 -34.27046 -33.44790 -30.37689 -29.54160 -26.39607 -25.26586 -22.09209 -21.03278 -20.24262 -17.67191 -16.35068 -15.54617 -14.78089 -14.45642 -14.28833 -13.56941 -13.14904 -12.93851 -12.49711 -12.45967 -12.20629 -11.68989 -11.64574 -11.28496 -11.12108 -11.01630 -10.79643 -10.67298 -10.54764 -10.41615 -9.62757 -9.47099 -9.21958 -7.50264 -7.45212 -6.81441 -4.41676 2.64875 2.85424 3.05290 3.08283 3.16998 3.30568 3.38625 3.89685 4.42517 4.67728 5.16307 5.30897 5.41024 5.64541 5.78918 5.91710 6.00669 6.13771 6.23239 6.33777 6.42187 6.52261 6.80196 7.00862 7.16903 7.28546 7.47776 7.79985 7.96413 7.97026 8.09407 8.21647 8.53996 8.83081 8.89009 10.13338 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030771 B = 0.008709 C = 0.007777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.742868 B = 3214.375532 C = 3599.369351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.052 3.948 4 H 0.112 0.888 5 C 0.235 3.765 6 N -0.463 5.463 7 C -0.077 4.077 8 C -0.228 4.228 9 C -0.094 4.094 10 C -0.221 4.221 11 C 0.109 3.891 12 C -0.463 4.463 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.793 5.793 16 Si 0.908 3.092 17 H -0.267 1.267 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.146 4.146 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.281 0.719 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 -5.294 -1.676 6.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C 0.031 3.969 4 H 0.129 0.871 5 C -0.082 4.082 6 N -0.139 5.139 7 C -0.078 4.078 8 C -0.247 4.247 9 C -0.112 4.112 10 C -0.240 4.240 11 C 0.106 3.894 12 C -0.492 4.492 13 H 0.097 0.903 14 C -0.141 4.141 15 N -0.419 5.419 16 Si 0.732 3.268 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.166 4.166 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.739 -4.309 -0.244 6.410 hybrid contribution 0.441 0.239 -1.049 1.163 sum -4.299 -4.069 -1.293 6.059 Atomic orbital electron populations 1.21879 0.96026 1.01675 1.01854 1.21545 0.95080 0.94221 1.03785 1.17888 0.95421 0.95148 0.88456 0.87060 1.29229 0.91734 0.92761 0.94526 1.81072 1.10721 1.10014 1.12088 1.18971 0.90247 1.01156 0.97448 1.20139 0.93627 1.09921 1.01061 1.20492 0.94058 0.99334 0.97331 1.21027 0.97793 1.08177 0.97036 1.17573 0.91543 0.89316 0.90936 1.19582 1.03083 1.14778 1.11752 0.90344 1.25901 0.94060 0.95079 0.99089 1.69810 1.18101 1.17431 1.36516 0.86320 0.80320 0.78038 0.82118 1.19200 1.20351 1.18634 1.21219 0.95143 1.01886 0.98329 0.92293 0.92467 0.93191 0.89729 0.91257 0.89608 0.89320 0.88947 0.90782 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.72 37.16 0.36 -1.47 16 2 C -0.11 -1.49 5.12 -26.73 -0.14 -1.62 16 3 C 0.05 0.89 2.43 -94.56 -0.23 0.67 16 4 H 0.11 1.77 7.86 -51.93 -0.41 1.37 16 5 C 0.23 4.43 13.20 -20.76 -0.27 4.15 16 6 N -0.46 -9.50 18.54 42.15 0.78 -8.72 16 7 C -0.08 -1.62 4.75 -104.70 -0.50 -2.12 16 8 C -0.23 -4.84 8.86 -39.29 -0.35 -5.19 16 9 C -0.09 -2.05 10.02 -39.66 -0.40 -2.45 16 10 C -0.22 -5.24 9.80 -38.87 -0.38 -5.62 16 11 C 0.11 2.76 5.57 -106.82 -0.60 2.17 16 12 C -0.46 -11.78 9.05 -37.74 -0.34 -12.12 16 13 H 0.08 1.93 7.91 -52.49 -0.42 1.52 16 14 C 0.08 1.84 5.14 -17.34 -0.09 1.76 16 15 N -0.79 -19.68 10.95 55.55 0.61 -19.07 16 16 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 18 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 C -0.15 -3.50 8.32 -38.87 -0.32 -3.83 16 21 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.62 7.38 -51.93 -0.38 0.24 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 0.97 7.57 -51.93 -0.39 0.57 16 26 H 0.09 1.68 7.62 -52.49 -0.40 1.28 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 29 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 30 H 0.12 2.98 6.03 -52.49 -0.32 2.66 16 LS Contribution 265.59 15.07 4.00 4.00 Total: -1.00 -27.02 265.59 -6.46 -33.47 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.56 Total: 3.02 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -3.25 Total: -25.67 kcal Atomic # 7 Polarization: -29.18 SS G_CDS: 1.39 Total: -27.79 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.02 -6.46 -33.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306717633.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.225 kcal (2) G-P(sol) polarization free energy of solvation -27.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds