Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47425 * 2 1 4 4 C 1.39652 * 120.07473 * 270.25556 * 3 2 1 5 5 C 1.43201 * 120.15339 * 359.97438 * 4 3 2 6 6 N 3.56157 * 94.77375 * 284.41323 * 2 1 3 7 7 C 1.39615 * 119.69629 * 180.24998 * 4 3 2 8 8 C 1.37964 * 119.84815 * 359.74361 * 7 4 3 9 9 C 1.38349 * 120.15133 * 0.02562 * 8 7 4 10 10 C 1.37917 * 120.07731 * 89.99409 * 3 2 1 11 11 C 1.50700 * 119.92573 * 0.02562 * 10 3 2 12 12 C 1.50702 * 109.46869 * 84.72160 * 11 10 3 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 H 1.08994 * 109.47430 * 300.00375 * 1 2 3 21 21 H 1.09006 * 109.46733 * 60.00423 * 1 2 3 22 22 H 1.08999 * 109.46699 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47731 * 239.99795 * 2 1 3 24 24 H 1.09003 * 109.47218 * 119.99746 * 2 1 3 25 25 H 1.08003 * 120.07778 * 179.76547 * 7 4 3 26 26 H 1.08006 * 119.92646 * 179.97438 * 8 7 4 27 27 H 1.07998 * 119.84670 * 180.02562 * 9 8 7 28 28 H 1.09004 * 109.47210 * 324.72453 * 11 10 3 29 29 H 1.08994 * 109.47551 * 204.72105 * 11 10 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2606 2.0824 -1.2085 5 6 2.0189 1.4137 -2.4515 6 7 1.8264 0.8834 -3.4375 7 6 2.7311 3.3969 -1.1993 8 6 2.9623 4.0351 0.0018 9 6 2.7295 3.3753 1.1954 10 6 2.2627 2.0725 1.1935 11 6 2.0119 1.3620 2.4986 12 6 3.2247 0.5473 2.8681 13 1 4.0907 0.5447 2.2226 14 6 3.2313 -0.1897 4.0334 15 7 2.1770 -0.1862 4.8195 16 14 4.7374 -1.1935 4.4951 17 1 5.6570 -0.3598 5.3104 18 1 4.3185 -2.3816 5.2813 19 1 5.4343 -1.6370 3.2611 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.9133 3.9131 -2.1303 26 1 3.3266 5.0518 0.0104 27 1 2.9117 3.8797 2.1327 28 1 1.1498 0.7033 2.3939 29 1 1.8155 2.0960 3.2800 30 1 2.1814 -0.7050 5.6392 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306825297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = 28.300717 kcal Electronic energy + Delta-G solvation = -13586.162513 eV Core-core repulsion = 11345.522483 eV Total energy + Delta-G solvation = -2240.640030 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41420 -36.17576 -34.12977 -33.09964 -31.41469 -29.34062 -27.17824 -23.93244 -23.60640 -22.04663 -19.91152 -17.65609 -16.39095 -15.62382 -15.45563 -14.61940 -14.00313 -13.64676 -13.16589 -13.03617 -12.67834 -12.52813 -12.50657 -12.13854 -11.60531 -11.44364 -11.29373 -11.14786 -10.80189 -10.65864 -10.35960 -10.24656 -9.62637 -9.50901 -8.49262 -8.35456 -7.97410 -6.12107 -4.16224 1.23208 1.85706 2.95556 3.26059 3.32661 3.34296 3.38689 4.24576 4.28881 4.42758 5.15205 5.22754 5.26384 5.48714 5.65156 5.79880 5.86795 5.96656 5.99754 6.24556 6.34930 6.48193 6.60590 6.70493 6.77957 6.93250 7.04823 7.34275 7.50446 7.66451 7.78922 7.83942 8.21630 8.89173 9.48338 10.97445 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.008918 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.641996 B = 3139.002641 C = 3439.824216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.029 4.029 4 C -0.046 4.046 5 C 0.272 3.728 6 N -0.445 5.445 7 C -0.096 4.096 8 C -0.130 4.130 9 C -0.092 4.092 10 C -0.037 4.037 11 C 0.046 3.954 12 C -0.514 4.514 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.063 0.937 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.108 0.892 25 H 0.120 0.880 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.038 0.962 29 H 0.030 0.970 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 5.622 -6.389 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.032 4.032 4 C -0.050 4.050 5 C -0.042 4.042 6 N -0.121 5.121 7 C -0.117 4.117 8 C -0.148 4.148 9 C -0.111 4.111 10 C -0.037 4.037 11 C 0.010 3.990 12 C -0.552 4.552 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 H 0.083 0.917 21 H 0.062 0.938 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.126 0.874 25 H 0.138 0.862 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.819 4.715 -7.760 9.117 hybrid contribution 0.986 -0.288 0.712 1.250 sum 0.168 4.427 -7.047 8.324 Atomic orbital electron populations 1.21679 0.94967 1.01498 1.01625 1.20708 0.95984 0.92645 1.04087 1.19833 0.96644 0.95966 0.90752 1.15966 1.08295 0.94372 0.86335 1.25823 0.92856 0.92823 0.92682 1.81159 1.10150 1.09089 1.11695 1.20862 0.99681 0.92735 0.98409 1.20958 1.01860 0.99914 0.92076 1.21378 0.97079 0.94644 0.97962 1.20544 0.93403 0.93160 0.96599 1.18432 0.98034 0.95287 0.87282 1.21011 1.00213 1.27677 1.06285 0.92375 1.24982 0.96151 0.96670 0.96266 1.69946 1.28675 1.41316 1.13020 0.86579 0.83000 0.79765 0.78664 1.20573 1.21166 1.19746 0.91748 0.93807 0.92624 0.92471 0.87358 0.86167 0.85936 0.85605 0.94355 0.95163 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.77 37.16 0.36 -1.90 16 2 C -0.10 -1.74 4.97 -27.88 -0.14 -1.88 16 3 C -0.03 -0.53 5.17 -104.21 -0.54 -1.07 16 4 C -0.05 -0.75 5.73 -106.93 -0.61 -1.37 16 5 C 0.27 4.54 13.81 -22.47 -0.31 4.23 16 6 N -0.44 -7.92 18.54 41.84 0.78 -7.14 16 7 C -0.10 -1.35 9.76 -39.17 -0.38 -1.74 16 8 C -0.13 -1.80 10.03 -39.64 -0.40 -2.20 16 9 C -0.09 -1.53 9.67 -39.49 -0.38 -1.91 16 10 C -0.04 -0.71 5.06 -104.68 -0.53 -1.24 16 11 C 0.05 1.07 4.42 -29.03 -0.13 0.94 16 12 C -0.51 -13.20 8.29 -34.44 -0.29 -13.49 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 16 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H 0.06 1.07 7.30 -51.93 -0.38 0.69 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.99 7.10 -51.93 -0.37 0.62 16 24 H 0.11 2.20 6.14 -51.93 -0.32 1.88 16 25 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 26 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 27 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 28 H 0.04 0.92 6.07 -51.93 -0.31 0.61 16 29 H 0.03 0.74 8.05 -51.93 -0.42 0.32 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 265.99 15.07 4.01 4.01 Total: -1.00 -27.46 265.99 -6.40 -33.85 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.45 Total: -2.11 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -3.44 Total: -20.08 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 1.51 Total: -31.20 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.46 -6.40 -33.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306825297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.152 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds