Wall clock time and date at job start Mon Mar 30 2020 03:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99890 * 274.99873 * 12 2 1 14 14 H 1.09007 * 108.85405 * 327.88130 * 13 12 2 15 15 C 1.53706 * 108.88659 * 86.45349 * 13 12 2 16 16 S 1.83400 * 104.96932 * 123.62164 * 15 13 12 17 17 C 1.83989 * 95.84994 * 19.74811 * 16 15 13 18 18 H 1.08999 * 111.12764 * 82.60503 * 17 16 15 19 19 C 1.53000 * 111.13052 * 206.73992 * 17 16 15 20 20 C 1.52938 * 108.88914 * 209.43735 * 13 12 2 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.00898 * 111.00476 * 38.95263 * 12 2 1 26 26 H 1.09004 * 110.34599 * 242.49397 * 15 13 12 27 27 H 1.09000 * 110.34531 * 4.64231 * 15 13 12 28 28 H 1.08999 * 109.46938 * 58.54674 * 19 17 16 29 29 H 1.08998 * 109.47151 * 178.54932 * 19 17 16 30 30 H 1.09001 * 109.46785 * 298.54730 * 19 17 16 31 31 H 1.08994 * 109.60656 * 329.03292 * 20 13 12 32 32 H 1.08997 * 109.60406 * 89.17979 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 1 2.3150 1.2245 1.9861 15 6 0.7097 0.2489 3.0379 16 16 1.0465 -0.2206 4.7786 17 6 2.8421 0.1784 4.7363 18 1 3.0119 1.2432 4.8957 19 6 3.6173 -0.6589 5.7556 20 6 3.2007 -0.2350 3.2844 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7096 1.1617 -3.4844 25 1 1.4495 -1.4979 1.4101 26 1 0.2813 1.2502 2.9917 27 1 0.0373 -0.4719 2.5728 28 1 3.4693 -1.7178 5.5437 29 1 4.6788 -0.4201 5.6899 30 1 3.2560 -0.4352 6.7594 31 1 3.3050 -1.3185 3.2280 32 1 4.1391 0.2358 2.9914 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306890223.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:04 Heat of formation + Delta-G solvation = -10.648488 kcal Electronic energy + Delta-G solvation = -12803.037709 eV Core-core repulsion = 10696.152667 eV Total energy + Delta-G solvation = -2106.885043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.60655 -34.59728 -32.58171 -30.30399 -27.35301 -26.46585 -25.04329 -22.28054 -20.40498 -20.00707 -16.72127 -16.15089 -15.07521 -14.78524 -14.60472 -13.99266 -13.51738 -12.93026 -12.59103 -12.40073 -12.33148 -11.69023 -11.59954 -11.42526 -11.09044 -10.89986 -10.80075 -10.49322 -10.35764 -10.18269 -9.91937 -9.59857 -8.99926 -8.39453 -7.62856 -7.29683 -6.01954 -4.05612 2.04339 2.55255 3.30763 3.37278 3.41737 4.39894 4.64771 4.86642 5.14467 5.17092 5.29230 5.31485 5.52840 5.60429 5.66303 5.79991 5.90327 6.01737 6.08042 6.37442 6.43485 6.63987 6.79301 7.02924 7.28591 7.69551 7.83742 8.20969 8.44234 8.54371 9.01478 9.59993 11.04920 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.058724 B = 0.006924 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.695463 B = 4042.657476 C = 4338.504604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.082 3.918 14 H 0.079 0.921 15 C -0.085 4.085 16 S -0.323 6.323 17 C -0.038 4.038 18 H 0.092 0.908 19 C -0.129 4.129 20 C -0.107 4.107 21 H 0.010 0.990 22 H 0.089 0.911 23 H 0.028 0.972 24 H 0.260 0.740 25 H 0.331 0.669 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 -0.631 11.941 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.302 5.302 13 C -0.031 4.031 14 H 0.097 0.903 15 C -0.235 4.235 16 S -0.098 6.098 17 C -0.166 4.166 18 H 0.110 0.890 19 C -0.187 4.187 20 C -0.147 4.147 21 H 0.029 0.971 22 H 0.107 0.893 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.437 -0.860 12.473 12.738 hybrid contribution -0.193 0.250 -1.619 1.650 sum 2.244 -0.610 10.854 11.100 Atomic orbital electron populations 1.22564 1.00635 0.99294 1.00795 1.19286 0.89727 0.94280 0.86435 0.94835 1.21148 1.30342 1.12504 0.89575 0.91911 1.24951 0.95303 0.95182 0.99084 1.69879 1.37285 1.23131 1.23405 0.86498 0.79250 0.79243 0.82406 1.20813 1.21363 1.19870 1.60886 1.58165 1.08410 1.02788 1.22099 0.90037 0.98539 0.92424 0.90325 1.25112 1.02318 1.04586 0.91499 1.87618 1.13716 1.88078 1.20381 1.24066 0.91494 1.02349 0.98739 0.88999 1.21596 0.99349 1.00192 0.97613 1.22443 0.99047 1.03250 0.89948 0.97114 0.89279 0.95304 0.93036 0.85109 0.89807 0.88097 0.91463 0.91347 0.92268 0.89829 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.31 37.16 0.31 -3.73 16 2 C 0.21 5.10 2.57 -68.86 -0.18 4.93 16 3 H 0.03 0.90 7.38 -51.93 -0.38 0.51 16 4 C -0.50 -13.52 8.84 -34.44 -0.30 -13.83 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.38 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.67 -13.67 5.91 -100.60 -0.59 -14.27 16 13 C 0.08 1.39 2.98 -67.38 -0.20 1.19 16 14 H 0.08 1.43 7.33 -51.93 -0.38 1.05 16 15 C -0.09 -1.37 5.45 37.52 0.20 -1.17 16 16 S -0.32 -4.87 22.72 -107.50 -2.44 -7.31 16 17 C -0.04 -0.48 3.94 -25.59 -0.10 -0.58 16 18 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 19 C -0.13 -1.35 9.42 37.16 0.35 -1.00 16 20 C -0.11 -1.55 5.46 -25.62 -0.14 -1.69 16 21 H 0.01 0.21 5.94 -51.93 -0.31 -0.10 16 22 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 23 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.33 6.53 7.81 -39.29 -0.31 6.22 16 26 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.10 1.71 6.26 -51.93 -0.32 1.38 16 28 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 264.82 15.07 3.99 3.99 Total: -1.00 -27.60 264.82 -8.52 -36.12 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.93 Total: 4.37 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -0.15 Total: -14.44 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.03 Total: -39.03 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.44 Total: -7.31 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.60 -8.52 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306890223.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.474 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds