Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46832 * 2 1 4 4 C 1.50696 * 109.47416 * 239.99557 * 2 1 3 5 5 H 1.07996 * 120.00258 * 268.75120 * 4 2 1 6 6 C 1.37877 * 119.99741 * 88.74949 * 4 2 1 7 7 N 1.31515 * 120.00282 * 353.31901 * 6 4 2 8 8 Si 1.86805 * 119.99745 * 173.31309 * 6 4 2 9 9 H 1.48500 * 109.46998 * 90.00348 * 8 6 4 10 10 H 1.48505 * 109.46947 * 209.99898 * 8 6 4 11 11 H 1.48499 * 109.47246 * 330.00149 * 8 6 4 12 12 N 1.46905 * 109.47075 * 119.99306 * 2 1 3 13 13 C 1.46894 * 111.00265 * 275.00194 * 12 2 1 14 14 H 1.09005 * 108.82967 * 36.46817 * 13 12 2 15 15 C 1.54253 * 108.87007 * 278.07772 * 13 12 2 16 16 S 1.83957 * 102.58194 * 214.65028 * 15 13 12 17 17 C 1.83957 * 94.80464 * 34.49462 * 16 15 13 18 18 H 1.09003 * 110.95609 * 83.85437 * 17 16 15 19 19 C 1.53000 * 110.78487 * 207.23337 * 17 16 15 20 20 C 1.52329 * 108.86764 * 154.99830 * 13 12 2 21 21 H 1.08995 * 109.47096 * 181.51287 * 1 2 3 22 22 H 1.08997 * 109.47278 * 301.52230 * 1 2 3 23 23 H 1.09007 * 109.47217 * 61.51671 * 1 2 3 24 24 H 0.96999 * 119.99608 * 354.40038 * 7 6 4 25 25 H 1.00901 * 110.99426 * 151.04620 * 12 2 1 26 26 H 1.09006 * 110.78685 * 332.92154 * 15 13 12 27 27 H 1.09000 * 110.78915 * 96.37866 * 15 13 12 28 28 H 1.09004 * 109.46756 * 173.15829 * 19 17 16 29 29 H 1.08996 * 109.47234 * 293.15566 * 19 17 16 30 30 H 1.09001 * 109.47676 * 53.15934 * 19 17 16 31 31 H 1.09003 * 108.86941 * 241.63777 * 20 13 12 32 32 H 1.08999 * 108.87362 * 0.14349 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2316 -1.7714 -1.1978 6 6 2.2376 -0.0060 -2.3976 7 7 1.8724 1.2549 -2.4777 8 14 3.0346 -0.8425 -3.8655 9 1 1.9839 -1.4590 -4.7147 10 1 3.7866 0.1621 -4.6597 11 1 3.9670 -1.8955 -3.3891 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2227 2.3469 14 1 1.2388 0.9111 2.2944 15 6 3.3912 1.0352 2.2661 16 16 3.8485 1.2354 4.0366 17 6 3.2025 -0.4089 4.5495 18 1 3.9398 -1.1911 4.3686 19 6 2.7817 -0.3921 6.0204 20 6 1.9763 -0.5895 3.6312 21 1 -0.3633 -1.0273 0.0271 22 1 -0.3633 0.5373 0.8760 23 1 -0.3634 0.4901 -0.9033 24 1 1.3860 1.6662 -1.7462 25 1 2.9173 -1.1204 1.0288 26 1 4.1592 0.4789 1.7286 27 1 3.2165 2.0047 1.7996 28 1 2.2921 -1.3338 6.2689 29 1 3.6629 -0.2638 6.6490 30 1 2.0903 0.4330 6.1912 31 1 1.0822 -0.2788 4.1719 32 1 1.8831 -1.6447 3.3744 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306890225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -18.904760 kcal Electronic energy + Delta-G solvation = -12835.907891 eV Core-core repulsion = 10728.664829 eV Total energy + Delta-G solvation = -2107.243062 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.62026 -34.76340 -32.66924 -30.35645 -27.33155 -26.59748 -24.81240 -22.68906 -20.48854 -19.59300 -17.12325 -16.41855 -15.22899 -14.75152 -14.37499 -13.77694 -13.64251 -13.43189 -12.68754 -12.64041 -12.05894 -11.91050 -11.48944 -11.23556 -11.17777 -11.03264 -10.76490 -10.56291 -10.43647 -10.22749 -10.15146 -9.67583 -8.61038 -8.42025 -7.66037 -7.41644 -6.44878 -4.18225 2.04141 2.50247 3.39624 3.42122 3.58200 4.45367 4.61277 4.87456 4.93127 5.16733 5.28180 5.32045 5.51528 5.55787 5.67424 5.67951 5.90165 5.98136 6.07827 6.31035 6.35595 6.49504 6.72487 6.85512 6.98204 7.46726 7.78575 7.98860 8.45445 8.49615 8.78788 9.56235 10.92896 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048405 B = 0.007305 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.312287 B = 3832.312228 C = 3980.252554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.191 3.809 3 H 0.009 0.991 4 C -0.601 4.601 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 1.069 2.931 9 H -0.288 1.288 10 H -0.284 1.284 11 H -0.288 1.288 12 N -0.677 5.677 13 C 0.084 3.916 14 H 0.081 0.919 15 C -0.081 4.081 16 S -0.322 6.322 17 C -0.034 4.034 18 H 0.092 0.908 19 C -0.131 4.131 20 C -0.113 4.113 21 H 0.043 0.957 22 H 0.014 0.986 23 H 0.044 0.956 24 H 0.270 0.730 25 H 0.338 0.662 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -2.792 11.918 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.027 0.973 4 C -0.640 4.640 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.545 5.545 8 Si 0.897 3.103 9 H -0.214 1.214 10 H -0.210 1.210 11 H -0.214 1.214 12 N -0.308 5.308 13 C -0.029 4.029 14 H 0.099 0.901 15 C -0.231 4.231 16 S -0.097 6.097 17 C -0.163 4.163 18 H 0.110 0.890 19 C -0.189 4.189 20 C -0.152 4.152 21 H 0.062 0.938 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.157 0.843 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.995 -1.859 11.143 11.472 hybrid contribution -0.335 -0.531 0.586 0.858 sum 1.660 -2.390 11.729 12.084 Atomic orbital electron populations 1.21818 0.98711 0.99780 0.97913 1.19335 0.91695 0.93224 0.87409 0.97303 1.22020 1.48774 0.96879 0.96288 0.92608 1.25839 0.95967 0.95617 1.00806 1.70770 1.36083 1.12301 1.35319 0.83551 0.76414 0.75081 0.75237 1.21435 1.20961 1.21419 1.61005 1.32548 1.31710 1.05557 1.22134 0.95123 0.93115 0.92539 0.90101 1.25099 1.00865 1.04733 0.92375 1.87773 1.82627 1.27074 1.12234 1.23869 0.99446 0.94547 0.98438 0.88982 1.21671 1.01755 1.02587 0.92911 1.22128 0.96561 1.02567 0.93974 0.93753 0.96707 0.93648 0.91858 0.84347 0.89188 0.88276 0.91328 0.92218 0.91556 0.91023 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.28 37.16 0.34 -2.50 16 2 C 0.19 4.60 2.03 -68.87 -0.14 4.46 16 3 H 0.01 0.24 6.34 -51.93 -0.33 -0.09 16 4 C -0.60 -16.19 8.28 -34.44 -0.29 -16.47 16 5 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 6 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 7 N -0.91 -26.68 13.55 55.43 0.75 -25.92 16 8 Si 1.07 24.60 29.91 -169.99 -5.08 19.51 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.68 -13.69 5.79 -100.63 -0.58 -14.27 16 13 C 0.08 1.44 2.78 -67.40 -0.19 1.26 16 14 H 0.08 1.49 7.07 -51.93 -0.37 1.12 16 15 C -0.08 -1.38 6.57 37.81 0.25 -1.13 16 16 S -0.32 -5.03 22.74 -107.50 -2.44 -7.47 16 17 C -0.03 -0.45 3.93 -26.07 -0.10 -0.55 16 18 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.13 -1.37 9.19 37.16 0.34 -1.03 16 20 C -0.11 -1.61 5.74 -26.41 -0.15 -1.76 16 21 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.01 0.29 7.40 -51.93 -0.38 -0.09 16 23 H 0.04 1.10 7.73 -51.93 -0.40 0.70 16 24 H 0.27 7.90 6.42 -40.82 -0.26 7.64 16 25 H 0.34 6.89 7.80 -39.29 -0.31 6.58 16 26 H 0.09 1.59 7.62 -51.93 -0.40 1.19 16 27 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.96 7.78 -51.93 -0.40 0.55 16 32 H 0.09 1.26 7.79 -51.93 -0.40 0.85 16 LS Contribution 269.17 15.07 4.06 4.06 Total: -1.00 -28.20 269.17 -8.33 -36.53 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.00 Total: 4.77 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -0.03 Total: -17.20 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.17 Total: -40.20 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Atomic # 16 Polarization: -5.03 SS G_CDS: -2.44 Total: -7.47 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.20 -8.33 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306890225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.625 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds