Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46832 * 2 1 4 4 C 1.50696 * 109.47416 * 239.99557 * 2 1 3 5 5 H 1.07996 * 120.00258 * 268.75120 * 4 2 1 6 6 C 1.37877 * 119.99741 * 88.74949 * 4 2 1 7 7 N 1.31515 * 120.00282 * 353.31901 * 6 4 2 8 8 Si 1.86805 * 119.99745 * 173.31309 * 6 4 2 9 9 H 1.48500 * 109.46998 * 90.00348 * 8 6 4 10 10 H 1.48505 * 109.46947 * 209.99898 * 8 6 4 11 11 H 1.48499 * 109.47246 * 330.00149 * 8 6 4 12 12 N 1.46905 * 109.47075 * 119.99306 * 2 1 3 13 13 C 1.46894 * 111.00265 * 275.00194 * 12 2 1 14 14 H 1.09005 * 108.82967 * 36.46817 * 13 12 2 15 15 C 1.54253 * 108.87007 * 278.07772 * 13 12 2 16 16 S 1.83957 * 102.58194 * 214.65028 * 15 13 12 17 17 C 1.83957 * 94.80464 * 34.49462 * 16 15 13 18 18 H 1.09003 * 110.95609 * 83.85437 * 17 16 15 19 19 C 1.53000 * 110.78487 * 207.23337 * 17 16 15 20 20 C 1.52329 * 108.86764 * 154.99830 * 13 12 2 21 21 H 1.08995 * 109.47096 * 181.51287 * 1 2 3 22 22 H 1.08997 * 109.47278 * 301.52230 * 1 2 3 23 23 H 1.09007 * 109.47217 * 61.51671 * 1 2 3 24 24 H 0.96999 * 119.99608 * 354.40038 * 7 6 4 25 25 H 1.00901 * 110.99426 * 151.04620 * 12 2 1 26 26 H 1.09006 * 110.78685 * 332.92154 * 15 13 12 27 27 H 1.09000 * 110.78915 * 96.37866 * 15 13 12 28 28 H 1.09004 * 109.46756 * 173.15829 * 19 17 16 29 29 H 1.08996 * 109.47234 * 293.15566 * 19 17 16 30 30 H 1.09001 * 109.47676 * 53.15934 * 19 17 16 31 31 H 1.09003 * 108.86941 * 241.63777 * 20 13 12 32 32 H 1.08999 * 108.87362 * 0.14349 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.2316 -1.7714 -1.1978 6 6 2.2376 -0.0060 -2.3976 7 7 1.8724 1.2549 -2.4777 8 14 3.0346 -0.8425 -3.8655 9 1 1.9839 -1.4590 -4.7147 10 1 3.7866 0.1621 -4.6597 11 1 3.9670 -1.8955 -3.3891 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2227 2.3469 14 1 1.2388 0.9111 2.2944 15 6 3.3912 1.0352 2.2661 16 16 3.8485 1.2354 4.0366 17 6 3.2025 -0.4089 4.5495 18 1 3.9398 -1.1911 4.3686 19 6 2.7817 -0.3921 6.0204 20 6 1.9763 -0.5895 3.6312 21 1 -0.3633 -1.0273 0.0271 22 1 -0.3633 0.5373 0.8760 23 1 -0.3634 0.4901 -0.9033 24 1 1.3860 1.6662 -1.7462 25 1 2.9173 -1.1204 1.0288 26 1 4.1592 0.4789 1.7286 27 1 3.2165 2.0047 1.7996 28 1 2.2921 -1.3338 6.2689 29 1 3.6629 -0.2638 6.6490 30 1 2.0903 0.4330 6.1912 31 1 1.0822 -0.2788 4.1719 32 1 1.8831 -1.6447 3.3744 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306890225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -35.863162 kcal Electronic energy + Delta-G solvation = -12836.643262 eV Core-core repulsion = 10728.664829 eV Total energy + Delta-G solvation = -2107.978433 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.14871 -36.36961 -34.27470 -32.01196 -29.01030 -27.80009 -26.85310 -23.94835 -22.28796 -20.97540 -19.07368 -17.70119 -16.75961 -16.17829 -15.93384 -15.62958 -14.96723 -14.81996 -14.28820 -13.77821 -13.66876 -13.29910 -13.12329 -12.92984 -12.69250 -12.52274 -12.35074 -12.21417 -11.95700 -11.85185 -11.66465 -10.94854 -10.66906 -10.46639 -9.24181 -8.80564 -8.64350 -6.37799 0.80657 1.26862 1.53764 1.60842 1.78780 2.55210 3.11443 3.35326 3.51658 3.82309 3.98313 4.01213 4.17283 4.35261 4.47921 4.54641 4.70478 4.77774 4.82404 4.89342 4.94884 4.98349 5.14049 5.19971 5.26803 5.53601 5.86150 6.01239 6.44736 6.54497 6.75214 7.45002 8.73950 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048405 B = 0.007305 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.312287 B = 3832.312228 C = 3980.252554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.193 3.807 3 H -0.018 1.018 4 C -0.608 4.608 5 H 0.052 0.948 6 C -0.026 4.026 7 N -0.936 5.936 8 Si 1.114 2.886 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.670 5.670 13 C 0.086 3.914 14 H 0.068 0.932 15 C -0.080 4.080 16 S -0.334 6.334 17 C -0.023 4.023 18 H 0.101 0.899 19 C -0.127 4.127 20 C -0.106 4.106 21 H 0.046 0.954 22 H 0.035 0.965 23 H 0.023 0.977 24 H 0.258 0.742 25 H 0.337 0.663 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -4.223 13.248 14.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 H 0.000 1.000 4 C -0.646 4.646 5 H 0.070 0.930 6 C -0.225 4.225 7 N -0.574 5.574 8 Si 0.937 3.063 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.301 5.301 13 C -0.026 4.026 14 H 0.086 0.914 15 C -0.231 4.231 16 S -0.109 6.109 17 C -0.151 4.151 18 H 0.120 0.880 19 C -0.185 4.185 20 C -0.145 4.145 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.155 0.845 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.181 -3.300 12.507 13.118 hybrid contribution -0.399 -0.092 0.271 0.492 sum 1.782 -3.392 12.779 13.341 Atomic orbital electron populations 1.21658 0.97825 0.99873 0.97845 1.19175 0.92346 0.91768 0.88247 1.00008 1.22335 1.48120 0.96801 0.97379 0.92989 1.27183 0.96105 0.95521 1.03731 1.70886 1.37760 1.13479 1.35231 0.82965 0.76217 0.74613 0.72549 1.20168 1.21221 1.19481 1.60947 1.32454 1.31844 1.04808 1.22220 0.94633 0.92881 0.92862 0.91391 1.24883 1.00642 1.03704 0.93824 1.87835 1.82978 1.29676 1.10401 1.24025 0.98711 0.92578 0.99793 0.88047 1.21687 1.02258 1.03822 0.90768 1.22032 0.97876 1.02048 0.92553 0.93521 0.94609 0.95757 0.93134 0.84475 0.90101 0.90006 0.88927 0.91455 0.91722 0.89585 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.22 9.28 71.98 0.67 -4.55 16 2 C 0.19 9.40 2.03 44.17 0.09 9.49 16 3 H -0.02 -0.96 6.34 -2.38 -0.02 -0.97 16 4 C -0.61 -32.88 8.28 25.60 0.21 -32.67 16 5 H 0.05 2.81 7.82 -2.91 -0.02 2.78 16 6 C -0.03 -1.47 5.45 84.65 0.46 -1.01 16 7 N -0.94 -56.06 13.55 21.45 0.29 -55.77 16 8 Si 1.11 49.24 29.91 68.60 2.05 51.29 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 12 N -0.67 -26.75 5.79 -472.27 -2.73 -29.48 16 13 C 0.09 2.92 2.78 45.12 0.13 3.04 16 14 H 0.07 2.48 7.07 -2.38 -0.02 2.46 16 15 C -0.08 -2.77 6.57 72.41 0.48 -2.29 16 16 S -0.33 -10.00 22.74 -56.49 -1.28 -11.29 16 17 C -0.02 -0.53 3.93 31.02 0.12 -0.41 16 18 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 19 C -0.13 -2.20 9.19 71.98 0.66 -1.54 16 20 C -0.11 -2.75 5.74 30.80 0.18 -2.58 16 21 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.03 1.45 7.40 -2.39 -0.02 1.43 16 23 H 0.02 1.18 7.73 -2.38 -0.02 1.16 16 24 H 0.26 15.64 6.42 -92.71 -0.59 15.04 16 25 H 0.34 13.57 7.80 -89.69 -0.70 12.87 16 26 H 0.08 2.90 7.62 -2.38 -0.02 2.88 16 27 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 2.03 7.78 -2.39 -0.02 2.01 16 32 H 0.09 2.36 7.79 -2.39 -0.02 2.34 16 Total: -1.00 -60.11 269.17 1.88 -58.23 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.56 Total: 19.53 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 2.99 Total: -32.51 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -2.44 Total: -85.25 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.05 Total: 51.29 kcal Atomic # 16 Polarization: -10.00 SS G_CDS: -1.28 Total: -11.29 kcal Total: -60.11 1.88 -58.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306890225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.363 kcal (2) G-P(sol) polarization free energy of solvation -60.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds