Wall clock time and date at job start Mon Mar 30 2020 02:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46743 * 2 1 4 4 C 1.37972 * 119.92178 * 269.97297 * 3 2 1 5 5 C 1.39607 * 119.84574 * 180.02562 * 4 3 2 6 6 C 1.43201 * 120.15402 * 179.97438 * 5 4 3 7 7 N 5.95843 * 105.89447 * 323.44836 * 2 1 3 8 8 C 1.39656 * 119.69891 * 359.97438 * 5 4 3 9 9 C 1.37916 * 119.84817 * 0.02562 * 8 5 4 10 10 C 1.50694 * 119.92741 * 179.97438 * 9 8 5 11 11 C 1.50703 * 109.47405 * 270.02116 * 10 9 8 12 12 H 1.07997 * 119.99471 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00076 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00187 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99973 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46996 * 59.99929 * 15 13 11 17 17 H 1.48497 * 109.47226 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47116 * 300.00090 * 15 13 11 19 19 C 1.38340 * 119.92873 * 90.00143 * 3 2 1 20 20 H 1.08998 * 109.47240 * 300.00481 * 1 2 3 21 21 H 1.09000 * 109.47065 * 60.00423 * 1 2 3 22 22 H 1.09004 * 109.47049 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47489 * 239.99970 * 2 1 3 24 24 H 1.09000 * 109.47065 * 119.99577 * 2 1 3 25 25 H 1.08001 * 120.07823 * 0.04473 * 4 3 2 26 26 H 1.08000 * 120.07290 * 180.02562 * 8 5 4 27 27 H 1.09003 * 109.47256 * 30.02353 * 10 9 8 28 28 H 1.09004 * 109.47422 * 150.01558 * 10 9 8 29 29 H 0.96995 * 120.00218 * 180.02562 * 14 13 11 30 30 H 1.07996 * 119.84478 * 0.24796 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0696 -1.1958 5 6 2.7279 3.3856 -1.1940 6 6 2.9693 4.0650 -2.4312 7 7 3.1618 4.6035 -3.4129 8 6 2.9575 4.0367 0.0201 9 6 2.7234 3.3763 1.2080 10 6 2.9710 4.0769 2.5190 11 6 4.3932 3.8369 2.9562 12 1 5.0516 3.2367 2.3459 13 6 4.8535 4.3836 4.1353 14 7 4.0515 5.1141 4.8787 15 14 6.6161 4.0854 4.6775 16 1 7.5468 4.6154 3.6488 17 1 6.8601 4.7759 5.9694 18 1 6.8424 2.6275 4.8457 19 6 2.2623 2.0716 1.1989 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.0819 1.5605 -2.1311 26 1 3.3174 5.0549 0.0285 27 1 2.8044 5.1471 2.3963 28 1 2.2881 3.6872 3.2740 29 1 4.3755 5.4990 5.7080 30 1 2.0850 1.5577 2.1320 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306917149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:49 Heat of formation + Delta-G solvation = 24.907480 kcal Electronic energy + Delta-G solvation = -13111.858015 eV Core-core repulsion = 10871.070844 eV Total energy + Delta-G solvation = -2240.787172 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29668 -36.30228 -34.44998 -33.11187 -31.42752 -29.37538 -27.21610 -23.83574 -23.67180 -22.77620 -19.75517 -17.52705 -16.36889 -15.80710 -15.48468 -14.63509 -14.18412 -13.71978 -13.62935 -13.03795 -12.72122 -12.62738 -12.50984 -12.33751 -11.73591 -11.52294 -11.38312 -11.10830 -10.93424 -10.79049 -10.60517 -10.44776 -9.67425 -9.55171 -8.49230 -8.36273 -8.05028 -6.11517 -4.16089 1.21605 1.81655 2.90483 3.28305 3.29536 3.33191 3.37060 4.18622 4.26042 4.42581 4.94647 5.11875 5.24041 5.30059 5.45271 5.61036 5.69000 5.73135 5.89269 5.96503 6.11580 6.24883 6.27798 6.50079 6.71812 6.86769 6.96191 7.32432 7.47044 7.64218 7.74568 7.83857 8.21214 8.88902 9.48636 10.98353 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.007954 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.883521 B = 3519.527592 C = 4224.664279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.090 4.090 4 C -0.096 4.096 5 C -0.039 4.039 6 C 0.270 3.730 7 N -0.443 5.443 8 C -0.076 4.076 9 C -0.033 4.033 10 C 0.047 3.953 11 C -0.517 4.517 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.087 4.087 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.264 0.736 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -8.419 -6.791 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.043 4.043 6 C -0.045 4.045 7 N -0.119 5.119 8 C -0.096 4.096 9 C -0.033 4.033 10 C 0.011 3.989 11 C -0.555 4.555 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.106 4.106 20 H 0.077 0.923 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.092 0.908 25 H 0.138 0.862 26 H 0.146 0.854 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.161 -7.475 -8.149 12.203 hybrid contribution 0.989 -0.245 0.766 1.275 sum -4.172 -7.720 -7.383 11.468 Atomic orbital electron populations 1.21760 0.94994 1.01329 1.02346 1.20499 0.95958 0.92679 1.02752 1.19708 1.00349 0.96183 0.92770 1.20720 1.00378 0.92683 0.97848 1.15996 1.07391 0.94124 0.86768 1.25904 0.92843 0.92938 0.92797 1.81174 1.10064 1.09179 1.11507 1.21140 0.98147 1.00237 0.90108 1.20631 0.91944 0.93727 0.96992 1.18392 0.97531 0.95630 0.87385 1.21009 0.95891 1.32480 1.06144 0.92346 1.24995 0.97767 0.94951 0.96429 1.69933 1.35660 1.33571 1.13955 0.86599 0.84700 0.78515 0.77915 1.20119 1.21193 1.20100 1.21247 0.97558 0.94519 0.97272 0.92283 0.92704 0.92747 0.91337 0.90809 0.86195 0.85405 0.94984 0.94884 0.92664 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.08 -0.89 6.06 -27.88 -0.17 -1.06 16 3 C -0.09 -1.26 5.13 -104.68 -0.54 -1.80 16 4 C -0.10 -1.34 9.41 -39.17 -0.37 -1.70 16 5 C -0.04 -0.62 5.73 -106.93 -0.61 -1.23 16 6 C 0.27 4.40 15.33 -22.47 -0.34 4.05 16 7 N -0.44 -7.82 18.54 41.84 0.78 -7.05 16 8 C -0.08 -1.35 9.40 -39.17 -0.37 -1.72 16 9 C -0.03 -0.63 5.06 -104.69 -0.53 -1.16 16 10 C 0.05 1.12 5.10 -29.04 -0.15 0.98 16 11 C -0.52 -13.66 9.09 -34.44 -0.31 -13.97 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 15 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.09 -1.46 9.34 -39.49 -0.37 -1.83 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 24 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 25 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.13 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 274.68 15.07 4.14 4.14 Total: -1.00 -28.16 274.68 -6.62 -34.78 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -3.76 Total: -4.06 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -3.49 Total: -18.98 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 1.51 Total: -31.68 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.16 -6.62 -34.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306917149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.687 kcal (2) G-P(sol) polarization free energy of solvation -28.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds