Wall clock time and date at job start Mon Mar 30 2020 02:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46743 * 2 1 4 4 C 1.37972 * 119.92178 * 269.97297 * 3 2 1 5 5 C 1.39607 * 119.84574 * 180.02562 * 4 3 2 6 6 C 1.43201 * 120.15402 * 179.97438 * 5 4 3 7 7 N 5.95843 * 105.89447 * 323.44836 * 2 1 3 8 8 C 1.39656 * 119.69891 * 359.97438 * 5 4 3 9 9 C 1.37916 * 119.84817 * 0.02562 * 8 5 4 10 10 C 1.50694 * 119.92741 * 179.97438 * 9 8 5 11 11 C 1.50703 * 109.47405 * 270.02116 * 10 9 8 12 12 H 1.07997 * 119.99471 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00076 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00187 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99973 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46996 * 59.99929 * 15 13 11 17 17 H 1.48497 * 109.47226 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47116 * 300.00090 * 15 13 11 19 19 C 1.38340 * 119.92873 * 90.00143 * 3 2 1 20 20 H 1.08998 * 109.47240 * 300.00481 * 1 2 3 21 21 H 1.09000 * 109.47065 * 60.00423 * 1 2 3 22 22 H 1.09004 * 109.47049 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47489 * 239.99970 * 2 1 3 24 24 H 1.09000 * 109.47065 * 119.99577 * 2 1 3 25 25 H 1.08001 * 120.07823 * 0.04473 * 4 3 2 26 26 H 1.08000 * 120.07290 * 180.02562 * 8 5 4 27 27 H 1.09003 * 109.47256 * 30.02353 * 10 9 8 28 28 H 1.09004 * 109.47422 * 150.01558 * 10 9 8 29 29 H 0.96995 * 120.00218 * 180.02562 * 14 13 11 30 30 H 1.07996 * 119.84478 * 0.24796 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2622 2.0696 -1.1958 5 6 2.7279 3.3856 -1.1940 6 6 2.9693 4.0650 -2.4312 7 7 3.1618 4.6035 -3.4129 8 6 2.9575 4.0367 0.0201 9 6 2.7234 3.3763 1.2080 10 6 2.9710 4.0769 2.5190 11 6 4.3932 3.8369 2.9562 12 1 5.0516 3.2367 2.3459 13 6 4.8535 4.3836 4.1353 14 7 4.0515 5.1141 4.8787 15 14 6.6161 4.0854 4.6775 16 1 7.5468 4.6154 3.6488 17 1 6.8601 4.7759 5.9694 18 1 6.8424 2.6275 4.8457 19 6 2.2623 2.0716 1.1989 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.0819 1.5605 -2.1311 26 1 3.3174 5.0549 0.0285 27 1 2.8044 5.1471 2.3963 28 1 2.2881 3.6872 3.2740 29 1 4.3755 5.4990 5.7080 30 1 2.0850 1.5577 2.1320 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306917149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:48 Heat of formation + Delta-G solvation = 11.358498 kcal Electronic energy + Delta-G solvation = -13112.445543 eV Core-core repulsion = 10871.070844 eV Total energy + Delta-G solvation = -2241.374700 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.59992 -37.64322 -35.88659 -34.67816 -33.04001 -30.51607 -28.95961 -25.36292 -24.97419 -24.11164 -21.06313 -18.86521 -18.42680 -17.09360 -16.74988 -16.52620 -15.27510 -15.04484 -14.57238 -14.42823 -14.36958 -14.04662 -13.90172 -13.68232 -13.19870 -13.00616 -12.79628 -12.55711 -12.40640 -12.35389 -11.89087 -11.68890 -11.50082 -11.29168 -10.57313 -9.64862 -9.46286 -8.18259 -6.30354 -0.09627 0.52749 1.43057 1.44452 1.52480 1.58638 1.97686 2.42540 2.87479 2.99435 3.14154 3.88547 4.04011 4.24009 4.40968 4.43759 4.63924 4.67197 4.72063 4.95201 5.15525 5.20553 5.22911 5.32539 5.39953 5.41055 5.52869 5.67559 5.77502 5.97220 6.01404 6.20896 6.42215 6.82862 7.38441 8.91108 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.007954 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.883521 B = 3519.527592 C = 4224.664279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.078 4.078 4 C -0.076 4.076 5 C -0.036 4.036 6 C 0.286 3.714 7 N -0.465 5.465 8 C -0.086 4.086 9 C -0.059 4.059 10 C 0.055 3.945 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.959 3.041 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.265 1.265 19 C -0.090 4.090 20 H 0.046 0.954 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.157 0.843 26 H 0.117 0.883 27 H 0.005 0.995 28 H 0.013 0.987 29 H 0.265 0.735 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -10.588 -8.208 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.040 4.040 6 C -0.028 4.028 7 N -0.141 5.141 8 C -0.107 4.107 9 C -0.059 4.059 10 C 0.018 3.982 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.784 3.216 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.109 4.109 20 H 0.065 0.935 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.111 0.889 24 H 0.096 0.904 25 H 0.174 0.826 26 H 0.136 0.864 27 H 0.024 0.976 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.992 -9.653 -9.577 14.486 hybrid contribution 0.868 0.391 1.159 1.500 sum -4.124 -9.262 -8.419 13.178 Atomic orbital electron populations 1.21758 0.94005 1.02576 1.01995 1.20599 0.96666 0.90290 1.04196 1.20021 0.98650 0.97654 0.91483 1.21131 0.97682 0.91546 0.99308 1.15931 1.07620 0.94862 0.85562 1.25824 0.92154 0.92367 0.92460 1.81198 1.10853 1.09679 1.12354 1.20996 0.99000 1.00060 0.90620 1.20214 0.95299 0.95079 0.95292 1.18123 0.96060 0.94454 0.89537 1.21391 0.97206 1.31968 1.06157 0.92347 1.25852 1.01882 0.94755 0.96632 1.70056 1.37623 1.34781 1.14455 0.85587 0.79723 0.78832 0.77474 1.19635 1.20863 1.19012 1.21300 0.97340 0.93508 0.98750 0.93453 0.92309 0.90767 0.88931 0.90427 0.82589 0.86444 0.97625 0.96914 0.92623 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.89 71.98 0.71 -1.63 16 2 C -0.08 -1.44 6.06 29.85 0.18 -1.26 16 3 C -0.08 -1.97 5.13 -19.90 -0.10 -2.07 16 4 C -0.08 -1.87 9.41 22.54 0.21 -1.65 16 5 C -0.04 -1.08 5.73 -21.36 -0.12 -1.21 16 6 C 0.29 8.83 15.33 88.33 1.35 10.18 16 7 N -0.46 -15.70 18.54 19.01 0.35 -15.35 16 8 C -0.09 -3.09 9.40 22.54 0.21 -2.88 16 9 C -0.06 -2.32 5.06 -19.91 -0.10 -2.42 16 10 C 0.06 2.75 5.10 29.10 0.15 2.90 16 11 C -0.53 -28.67 9.09 25.60 0.23 -28.44 16 12 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 13 C 0.01 0.40 5.46 84.65 0.46 0.86 16 14 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 15 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 19 C -0.09 -2.95 9.34 22.33 0.21 -2.74 16 20 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.09 1.29 8.08 -2.39 -0.02 1.27 16 24 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 25 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 26 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 27 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 28 H 0.01 0.66 8.08 -2.38 -0.02 0.64 16 29 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -61.31 274.68 7.18 -54.13 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: 1.12 Total: 0.65 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.40 Total: -30.36 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: 0.64 Total: -69.40 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -61.31 7.18 -54.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306917149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.488 kcal (2) G-P(sol) polarization free energy of solvation -61.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds