Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38654 * 119.87446 * 2 1 4 4 C 1.38621 * 120.49755 * 180.02562 * 3 2 1 5 5 C 1.37640 * 120.24754 * 359.73873 * 4 3 2 6 6 C 1.50701 * 120.12476 * 180.25715 * 5 4 3 7 7 C 1.52997 * 109.46904 * 265.25542 * 6 5 4 8 8 C 1.47201 * 109.47041 * 180.02562 * 7 6 5 9 9 N 7.54843 * 169.18556 * 268.94062 * 2 1 3 10 10 C 1.40693 * 119.74585 * 0.51006 * 5 4 3 11 11 C 1.41389 * 120.24600 * 179.76612 * 10 5 4 12 12 H 1.08003 * 119.99758 * 333.65113 * 11 10 5 13 13 C 1.39949 * 120.00132 * 153.92339 * 11 10 5 14 14 N 1.30823 * 120.00241 * 343.50585 * 13 11 10 15 15 Si 1.86797 * 119.99779 * 163.50303 * 13 11 10 16 16 H 1.48499 * 109.47242 * 90.00521 * 15 13 11 17 17 H 1.48502 * 109.47036 * 209.99827 * 15 13 11 18 18 H 1.48496 * 109.47784 * 330.00073 * 15 13 11 19 19 C 1.37596 * 119.87195 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.46999 * 269.98115 * 1 2 3 21 21 H 1.09004 * 109.46583 * 29.98270 * 1 2 3 22 22 H 1.08998 * 109.46895 * 149.97624 * 1 2 3 23 23 H 1.07996 * 119.75419 * 0.04332 * 3 2 1 24 24 H 1.08000 * 119.87247 * 180.02562 * 4 3 2 25 25 H 1.08996 * 109.47291 * 25.25579 * 6 5 4 26 26 H 1.09006 * 109.47013 * 145.25671 * 6 5 4 27 27 H 1.09004 * 109.47265 * 299.99778 * 7 6 5 28 28 H 1.08992 * 109.47272 * 60.00319 * 7 6 5 29 29 H 0.96987 * 120.00302 * 179.97438 * 14 13 11 30 30 H 1.07998 * 120.12951 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.2023 0.0000 4 6 3.5838 1.2174 -0.0005 5 6 4.2900 0.0360 0.0044 6 6 5.7969 0.0556 0.0096 7 6 6.3134 -0.0600 -1.4259 8 6 7.7853 -0.0414 -1.4208 9 7 8.9214 -0.0262 -1.4161 10 6 3.5998 -1.1900 -0.0010 11 6 4.3147 -2.4098 -0.0010 12 1 5.3124 -2.4510 -0.4125 13 6 3.7273 -3.5652 0.5270 14 7 2.6761 -3.4699 1.2999 15 14 4.4441 -5.2433 0.1279 16 1 5.4671 -5.5990 1.1439 17 1 3.3613 -6.2595 0.1390 18 1 5.0739 -5.2057 -1.2165 19 6 2.1924 -1.1931 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5136 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6517 2.1341 0.0007 24 1 4.1115 2.1597 -0.0001 25 1 6.1466 0.9906 0.4474 26 1 6.1692 -0.7829 0.5983 27 1 5.9638 -0.9950 -1.8637 28 1 5.9412 0.7784 -2.0146 29 1 2.2688 -4.2706 1.6655 30 1 1.6524 -2.1285 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306922870.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = 18.119473 kcal Electronic energy + Delta-G solvation = -13502.344814 eV Core-core repulsion = 11261.263293 eV Total energy + Delta-G solvation = -2241.081522 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.11249 -36.35416 -33.89777 -33.49090 -30.38752 -29.56583 -26.19362 -25.47266 -22.62084 -21.10961 -19.12011 -17.10708 -16.84699 -15.38850 -14.69450 -14.44921 -13.65645 -13.64507 -13.23500 -12.72053 -12.63374 -12.49310 -12.03632 -11.65027 -11.38297 -11.33092 -11.24158 -11.10673 -10.90539 -10.57024 -10.29259 -10.18743 -9.49487 -9.38018 -9.17726 -7.39594 -7.20663 -6.77842 -4.41076 2.71438 2.88636 3.05522 3.08870 3.16499 3.19783 3.20756 3.89997 4.48986 4.58692 5.48670 5.66064 5.93874 5.97222 6.01861 6.11145 6.30030 6.38173 6.43086 6.46130 6.62684 6.71652 6.84766 7.06020 7.27269 7.38841 7.59200 7.86143 7.94477 8.00201 8.09224 8.26272 8.58206 8.85025 8.94010 10.15187 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.014023 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.396947 B = 1996.188618 C = 3558.932666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.079 4.079 3 C -0.237 4.237 4 C -0.084 4.084 5 C -0.203 4.203 6 C -0.044 4.044 7 C -0.028 4.028 8 C 0.221 3.779 9 N -0.469 5.469 10 C 0.120 3.880 11 C -0.462 4.462 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.792 5.792 15 Si 0.901 3.099 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.260 1.260 19 C -0.158 4.158 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.280 0.720 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 2.180 -2.645 3.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.080 4.080 3 C -0.256 4.256 4 C -0.103 4.103 5 C -0.205 4.205 6 C -0.083 4.083 7 C -0.068 4.068 8 C -0.096 4.096 9 N -0.147 5.147 10 C 0.118 3.882 11 C -0.491 4.491 12 H 0.099 0.901 13 C -0.140 4.140 14 N -0.417 5.417 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.184 1.184 19 C -0.177 4.177 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.084 2.048 -2.498 3.232 hybrid contribution -0.267 -0.832 -0.012 0.873 sum -0.182 1.216 -2.510 2.796 Atomic orbital electron populations 1.20648 0.94009 1.00588 1.00633 1.19536 0.93907 0.93977 1.00552 1.20226 0.93746 0.95562 1.16105 1.20386 0.93743 0.95812 1.00310 1.19421 0.92522 0.93238 1.15322 1.20052 0.94012 1.01604 0.92615 1.19570 0.79874 1.05709 1.01658 1.29747 0.95705 0.92016 0.92115 1.81134 1.13420 1.10286 1.09883 1.17406 0.91704 0.91455 0.87663 1.19557 1.01762 0.92503 1.35289 0.90141 1.25881 0.94201 1.01217 0.92701 1.69813 1.18454 1.31397 1.22045 0.86425 0.79498 0.81301 0.80256 1.19550 1.20155 1.18399 1.21210 0.94378 0.95978 1.06118 0.92777 0.93369 0.92895 0.89644 0.89357 0.92828 0.90712 0.86926 0.88029 0.90906 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 10.00 36.01 0.36 -1.48 16 2 C -0.08 -1.74 5.87 -104.70 -0.61 -2.35 16 3 C -0.24 -4.95 9.70 -39.29 -0.38 -5.34 16 4 C -0.08 -1.71 9.66 -39.66 -0.38 -2.09 16 5 C -0.20 -4.30 5.19 -103.91 -0.54 -4.84 16 6 C -0.04 -0.78 4.64 -27.88 -0.13 -0.91 16 7 C -0.03 -0.42 5.58 -29.52 -0.16 -0.59 16 8 C 0.22 3.58 15.43 -20.75 -0.32 3.26 16 9 N -0.47 -8.57 18.54 42.16 0.78 -7.79 16 10 C 0.12 2.87 5.56 -106.83 -0.59 2.28 16 11 C -0.46 -10.99 8.10 -37.74 -0.31 -11.30 16 12 H 0.08 1.80 6.10 -52.48 -0.32 1.48 16 13 C 0.08 1.83 5.16 -17.34 -0.09 1.75 16 14 N -0.79 -19.43 10.97 55.55 0.61 -18.82 16 15 Si 0.90 17.83 29.59 -169.99 -5.03 12.80 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 C -0.16 -3.80 8.33 -38.87 -0.32 -4.13 16 20 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 21 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 22 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 23 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 24 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 25 H 0.05 0.87 8.05 -51.93 -0.42 0.45 16 26 H 0.07 1.42 7.07 -51.93 -0.37 1.06 16 27 H 0.11 1.72 7.29 -51.93 -0.38 1.34 16 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 30 H 0.12 2.96 6.22 -52.49 -0.33 2.64 16 LS Contribution 265.23 15.07 4.00 4.00 Total: -1.00 -26.12 265.23 -6.60 -32.73 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.47 Total: 2.84 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -3.49 Total: -25.74 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 1.39 Total: -26.62 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.12 -6.60 -32.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306922870.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.846 kcal (2) G-P(sol) polarization free energy of solvation -26.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds