Wall clock time and date at job start Mon Mar 30 2020 02:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38654 * 119.87446 * 2 1 4 4 C 1.38621 * 120.49755 * 180.02562 * 3 2 1 5 5 C 1.37640 * 120.24754 * 359.73873 * 4 3 2 6 6 C 1.50701 * 120.12476 * 180.25715 * 5 4 3 7 7 C 1.52997 * 109.46904 * 265.25542 * 6 5 4 8 8 C 1.47201 * 109.47041 * 180.02562 * 7 6 5 9 9 N 7.54843 * 169.18556 * 268.94062 * 2 1 3 10 10 C 1.40693 * 119.74585 * 0.51006 * 5 4 3 11 11 C 1.41389 * 120.24600 * 179.76612 * 10 5 4 12 12 H 1.08003 * 119.99758 * 333.65113 * 11 10 5 13 13 C 1.39949 * 120.00132 * 153.92339 * 11 10 5 14 14 N 1.30823 * 120.00241 * 343.50585 * 13 11 10 15 15 Si 1.86797 * 119.99779 * 163.50303 * 13 11 10 16 16 H 1.48499 * 109.47242 * 90.00521 * 15 13 11 17 17 H 1.48502 * 109.47036 * 209.99827 * 15 13 11 18 18 H 1.48496 * 109.47784 * 330.00073 * 15 13 11 19 19 C 1.37596 * 119.87195 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.46999 * 269.98115 * 1 2 3 21 21 H 1.09004 * 109.46583 * 29.98270 * 1 2 3 22 22 H 1.08998 * 109.46895 * 149.97624 * 1 2 3 23 23 H 1.07996 * 119.75419 * 0.04332 * 3 2 1 24 24 H 1.08000 * 119.87247 * 180.02562 * 4 3 2 25 25 H 1.08996 * 109.47291 * 25.25579 * 6 5 4 26 26 H 1.09006 * 109.47013 * 145.25671 * 6 5 4 27 27 H 1.09004 * 109.47265 * 299.99778 * 7 6 5 28 28 H 1.08992 * 109.47272 * 60.00319 * 7 6 5 29 29 H 0.96987 * 120.00302 * 179.97438 * 14 13 11 30 30 H 1.07998 * 120.12951 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.2023 0.0000 4 6 3.5838 1.2174 -0.0005 5 6 4.2900 0.0360 0.0044 6 6 5.7969 0.0556 0.0096 7 6 6.3134 -0.0600 -1.4259 8 6 7.7853 -0.0414 -1.4208 9 7 8.9214 -0.0262 -1.4161 10 6 3.5998 -1.1900 -0.0010 11 6 4.3147 -2.4098 -0.0010 12 1 5.3124 -2.4510 -0.4125 13 6 3.7273 -3.5652 0.5270 14 7 2.6761 -3.4699 1.2999 15 14 4.4441 -5.2433 0.1279 16 1 5.4671 -5.5990 1.1439 17 1 3.3613 -6.2595 0.1390 18 1 5.0739 -5.2057 -1.2165 19 6 2.1924 -1.1931 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5136 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6517 2.1341 0.0007 24 1 4.1115 2.1597 -0.0001 25 1 6.1466 0.9906 0.4474 26 1 6.1692 -0.7829 0.5983 27 1 5.9638 -0.9950 -1.8637 28 1 5.9412 0.7784 -2.0146 29 1 2.2688 -4.2706 1.6655 30 1 1.6524 -2.1285 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306922870.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:06 Heat of formation + Delta-G solvation = 6.553397 kcal Electronic energy + Delta-G solvation = -13502.846357 eV Core-core repulsion = 11261.263293 eV Total energy + Delta-G solvation = -2241.583064 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73917 -37.73501 -35.57011 -35.02741 -31.85876 -31.26979 -27.68196 -27.19285 -24.09770 -22.81515 -20.75235 -18.74654 -18.24239 -17.01586 -16.17039 -16.02390 -15.26165 -15.14750 -14.66146 -14.28965 -14.18942 -13.89714 -13.45289 -13.26972 -12.96297 -12.79952 -12.72743 -12.63899 -12.50013 -12.13343 -11.77213 -11.66251 -11.12516 -11.02208 -10.90148 -9.12672 -8.86860 -8.50061 -6.19847 1.06459 1.23169 1.43486 1.52546 1.59629 1.85814 1.87177 2.25438 2.85245 3.20062 3.81896 4.36155 4.51621 4.53715 4.58416 4.69836 4.85869 4.91063 4.98820 5.01574 5.19586 5.26558 5.28383 5.44059 5.55626 5.72151 5.92264 6.18453 6.30203 6.39369 6.55061 6.65375 6.86273 7.09246 7.22605 8.44118 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.014023 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.396947 B = 1996.188618 C = 3558.932666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.092 4.092 3 C -0.240 4.240 4 C -0.089 4.089 5 C -0.202 4.202 6 C -0.041 4.041 7 C -0.015 4.015 8 C 0.244 3.756 9 N -0.504 5.504 10 C 0.091 3.909 11 C -0.485 4.485 12 H 0.087 0.913 13 C 0.037 3.963 14 N -0.829 5.829 15 Si 0.963 3.037 16 H -0.270 1.270 17 H -0.274 1.274 18 H -0.255 1.255 19 C -0.190 4.190 20 H 0.059 0.941 21 H 0.073 0.927 22 H 0.051 0.949 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.111 0.889 28 H 0.131 0.869 29 H 0.282 0.718 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 3.429 -3.282 4.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.092 4.092 3 C -0.259 4.259 4 C -0.107 4.107 5 C -0.204 4.204 6 C -0.079 4.079 7 C -0.055 4.055 8 C -0.072 4.072 9 N -0.183 5.183 10 C 0.088 3.912 11 C -0.515 4.515 12 H 0.105 0.895 13 C -0.177 4.177 14 N -0.456 5.456 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.179 1.179 19 C -0.209 4.209 20 H 0.078 0.922 21 H 0.092 0.908 22 H 0.070 0.930 23 H 0.129 0.871 24 H 0.140 0.860 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.093 0.907 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.371 3.307 -3.141 4.576 hybrid contribution -0.404 -1.077 0.201 1.167 sum -0.033 2.231 -2.940 3.691 Atomic orbital electron populations 1.20656 0.91709 1.01839 1.01346 1.19953 0.95945 0.93667 0.99662 1.20630 0.94437 0.96090 1.14748 1.20788 0.93867 0.96862 0.99142 1.19745 0.94281 0.92639 1.13688 1.19998 0.91894 1.01876 0.94175 1.19494 0.78887 1.06903 1.00227 1.29792 0.95579 0.90838 0.91026 1.81167 1.14490 1.11629 1.10966 1.17756 0.92026 0.92792 0.88587 1.19815 1.02299 0.93240 1.36115 0.89475 1.26598 0.94470 1.04279 0.92334 1.69892 1.19995 1.32221 1.23461 0.85481 0.78641 0.77366 0.79971 1.19525 1.19911 1.17901 1.21207 0.94961 0.96091 1.08686 0.92236 0.90818 0.92958 0.87123 0.86000 0.90853 0.92553 0.87096 0.85120 0.90733 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.44 10.00 71.24 0.71 -2.73 16 2 C -0.09 -3.95 5.87 -19.92 -0.12 -4.06 16 3 C -0.24 -9.42 9.70 22.46 0.22 -9.20 16 4 C -0.09 -3.34 9.66 22.22 0.21 -3.13 16 5 C -0.20 -8.23 5.19 -19.41 -0.10 -8.33 16 6 C -0.04 -1.36 4.64 29.85 0.14 -1.22 16 7 C -0.02 -0.42 5.58 28.79 0.16 -0.26 16 8 C 0.24 7.36 15.43 89.44 1.38 8.75 16 9 N -0.50 -17.61 18.54 20.01 0.37 -17.24 16 10 C 0.09 4.35 5.56 -21.29 -0.12 4.23 16 11 C -0.48 -23.41 8.10 23.46 0.19 -23.22 16 12 H 0.09 3.91 6.10 -2.91 -0.02 3.89 16 13 C 0.04 1.79 5.16 85.26 0.44 2.23 16 14 N -0.83 -42.05 10.97 21.83 0.24 -41.81 16 15 Si 0.96 37.06 29.59 68.60 2.03 39.09 16 16 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 17 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 18 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 19 C -0.19 -9.34 8.33 22.73 0.19 -9.15 16 20 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 21 H 0.07 2.15 8.08 -2.38 -0.02 2.13 16 22 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 23 H 0.11 3.74 8.06 -2.91 -0.02 3.72 16 24 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 25 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 26 H 0.06 2.09 7.07 -2.38 -0.02 2.08 16 27 H 0.11 3.18 7.29 -2.38 -0.02 3.16 16 28 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.28 13.20 8.30 -92.72 -0.77 12.43 16 30 H 0.09 4.98 6.22 -2.91 -0.02 4.96 16 Total: -1.00 -56.26 265.23 7.09 -49.18 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.14 Total: 16.86 kcal Atomic # 6 Polarization: -49.39 SS G_CDS: 3.31 Total: -46.08 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.61 Total: -59.05 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Total: -56.26 7.09 -49.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306922870.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.732 kcal (2) G-P(sol) polarization free energy of solvation -56.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds