Wall clock time and date at job start Mon Mar 30 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37638 * 120.12596 * 2 1 4 4 C 1.38610 * 120.24468 * 180.02562 * 3 2 1 5 5 C 1.38655 * 120.50649 * 359.97438 * 4 3 2 6 6 C 1.37597 * 120.24422 * 359.75943 * 5 4 3 7 7 C 1.50703 * 120.12906 * 180.27857 * 6 5 4 8 8 C 1.52999 * 109.47323 * 265.23961 * 7 6 5 9 9 C 1.47202 * 109.47260 * 179.97438 * 8 7 6 10 10 N 6.97472 * 128.85043 * 195.08310 * 2 1 3 11 11 C 1.40697 * 120.12707 * 180.02562 * 2 1 3 12 12 C 1.41395 * 120.24619 * 359.97138 * 11 2 1 13 13 H 1.07995 * 120.00324 * 131.96901 * 12 11 2 14 14 C 1.39952 * 120.00090 * 311.69075 * 12 11 2 15 15 N 1.30829 * 119.99537 * 341.87016 * 14 12 11 16 16 Si 1.86794 * 120.00107 * 161.86693 * 14 12 11 17 17 H 1.48494 * 109.47207 * 60.00021 * 16 14 12 18 18 H 1.48497 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47206 * 300.00170 * 16 14 12 20 20 H 1.09000 * 109.46932 * 271.20589 * 1 2 3 21 21 H 1.08996 * 109.47134 * 31.20741 * 1 2 3 22 22 H 1.09004 * 109.47200 * 151.21214 * 1 2 3 23 23 H 1.07998 * 119.87385 * 0.04779 * 3 2 1 24 24 H 1.08005 * 119.74824 * 180.02562 * 4 3 2 25 25 H 1.07995 * 119.87653 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.46758 * 25.23730 * 7 6 5 27 27 H 1.09004 * 109.47158 * 145.23313 * 7 6 5 28 28 H 1.08996 * 109.47166 * 299.99763 * 8 7 6 29 29 H 1.08999 * 109.47102 * 59.99688 * 8 7 6 30 30 H 0.97004 * 119.99428 * 185.16729 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1905 0.0000 4 6 3.5840 1.1933 -0.0005 5 6 4.2903 0.0002 -0.0005 6 6 3.6205 -1.2017 0.0050 7 6 4.3908 -2.4970 0.0113 8 6 4.5490 -3.0034 -1.4238 9 6 5.3020 -4.2682 -1.4177 10 7 5.8822 -5.2447 -1.4135 11 6 2.2132 -1.2169 -0.0005 12 6 1.5143 -2.4460 -0.0005 13 1 1.7906 -3.2245 -0.6961 14 6 0.4680 -2.6560 0.9050 15 7 0.3579 -1.8967 1.9647 16 14 -0.7712 -4.0201 0.6004 17 1 -0.0677 -5.3270 0.5558 18 1 -1.7723 -4.0334 1.6971 19 1 -1.4592 -3.7839 -0.6943 20 1 -0.3633 0.0216 1.0274 21 1 -0.3633 0.8789 -0.5325 22 1 -0.3634 -0.9007 -0.4949 23 1 1.6579 2.1257 0.0008 24 1 4.1179 2.1322 -0.0001 25 1 5.3702 0.0143 -0.0005 26 1 5.3754 -2.3320 0.4490 27 1 3.8508 -3.2380 0.6007 28 1 3.5645 -3.1683 -1.8614 29 1 5.0890 -2.2623 -2.0131 30 1 -0.3211 -2.0887 2.6304 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307117876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:11 Heat of formation + Delta-G solvation = 24.459051 kcal Electronic energy + Delta-G solvation = -13735.210102 eV Core-core repulsion = 11494.403485 eV Total energy + Delta-G solvation = -2240.806617 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.23521 -36.36647 -33.78077 -33.35341 -30.53816 -29.26030 -26.42033 -24.75865 -23.54392 -20.40681 -19.11026 -17.18668 -16.92894 -15.37566 -14.72578 -14.50120 -13.73861 -13.72050 -13.17654 -12.64022 -12.53574 -12.15270 -11.96295 -11.53406 -11.45632 -11.33300 -11.25762 -10.98391 -10.79438 -10.45331 -10.28676 -10.25475 -9.60383 -9.39207 -8.83715 -7.33320 -7.05126 -6.64300 -4.42266 2.70636 2.84583 3.10615 3.14047 3.15945 3.16945 3.19307 4.00141 4.48654 4.67886 5.31846 5.64735 5.89093 5.96040 6.09297 6.20146 6.30357 6.38707 6.57976 6.68429 6.86331 6.90610 7.03222 7.14746 7.24492 7.34541 7.68931 7.82533 7.84886 7.94517 8.07235 8.22820 8.54760 8.88527 8.94856 10.33562 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.013957 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.515740 B = 2005.661558 C = 3238.580001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.215 4.215 5 C -0.103 4.103 6 C -0.166 4.166 7 C -0.047 4.047 8 C -0.026 4.026 9 C 0.221 3.779 10 N -0.468 5.468 11 C 0.129 3.871 12 C -0.487 4.487 13 H 0.079 0.921 14 C 0.086 3.914 15 N -0.804 5.804 16 Si 0.891 3.109 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.265 1.265 20 H 0.066 0.934 21 H 0.022 0.978 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 2.116 -3.131 3.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C -0.126 4.126 4 C -0.234 4.234 5 C -0.121 4.121 6 C -0.167 4.167 7 C -0.085 4.085 8 C -0.066 4.066 9 C -0.095 4.095 10 N -0.146 5.146 11 C 0.127 3.873 12 C -0.518 4.518 13 H 0.097 0.903 14 C -0.130 4.130 15 N -0.431 5.431 16 Si 0.716 3.284 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.190 1.190 20 H 0.084 0.916 21 H 0.041 0.959 22 H 0.077 0.923 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.611 0.716 -2.947 3.435 hybrid contribution -0.876 -0.149 0.089 0.893 sum 0.735 0.567 -2.859 3.005 Atomic orbital electron populations 1.20593 0.93274 0.99095 1.01174 1.19973 0.94908 0.92608 1.04936 1.20570 0.93913 0.96401 1.01740 1.20442 0.93937 0.96210 1.12831 1.20484 0.97262 0.92689 1.01693 1.19730 0.93994 0.92202 1.10818 1.20090 0.98878 0.96714 0.92847 1.19520 0.99215 0.86413 1.01463 1.29674 0.92932 0.94778 0.92157 1.81122 1.11280 1.12376 1.09810 1.17235 0.89764 0.92554 0.87768 1.19188 1.13829 1.00257 1.18484 0.90310 1.25610 0.96622 0.96283 0.94468 1.69783 1.30903 1.35630 1.06773 0.86647 0.80824 0.81904 0.79023 1.19314 1.20606 1.18967 0.91558 0.95888 0.92281 0.89322 0.89253 0.89097 0.92776 0.90094 0.86967 0.88113 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 8.30 36.01 0.30 -1.56 16 2 C -0.12 -2.86 5.58 -103.91 -0.58 -3.44 16 3 C -0.11 -2.32 9.68 -39.66 -0.38 -2.70 16 4 C -0.22 -4.36 10.05 -39.29 -0.39 -4.76 16 5 C -0.10 -2.04 9.66 -39.66 -0.38 -2.43 16 6 C -0.17 -3.46 5.19 -103.91 -0.54 -4.00 16 7 C -0.05 -0.83 4.79 -27.88 -0.13 -0.96 16 8 C -0.03 -0.39 5.67 -29.52 -0.17 -0.55 16 9 C 0.22 3.57 15.43 -20.76 -0.32 3.25 16 10 N -0.47 -8.56 18.54 42.15 0.78 -7.78 16 11 C 0.13 3.01 5.20 -106.83 -0.56 2.45 16 12 C -0.49 -11.44 6.87 -37.74 -0.26 -11.70 16 13 H 0.08 1.76 6.81 -52.49 -0.36 1.41 16 14 C 0.09 2.02 3.54 -17.34 -0.06 1.96 16 15 N -0.80 -19.78 10.83 55.55 0.60 -19.18 16 16 Si 0.89 18.10 29.60 -169.99 -5.03 13.07 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 20 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 21 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 22 H 0.06 1.32 6.34 -51.93 -0.33 0.99 16 23 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 24 H 0.09 1.60 8.06 -52.48 -0.42 1.17 16 25 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 27 H 0.08 1.58 7.31 -51.93 -0.38 1.20 16 28 H 0.11 1.68 7.09 -51.93 -0.37 1.31 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 261.34 15.07 3.94 3.94 Total: -1.00 -25.96 261.34 -6.64 -32.60 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -3.45 Total: 1.79 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -3.48 Total: -24.44 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 1.38 Total: -26.96 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -25.96 -6.64 -32.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307117876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.056 kcal (2) G-P(sol) polarization free energy of solvation -25.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds