Wall clock time and date at job start Mon Mar 30 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37638 * 120.12596 * 2 1 4 4 C 1.38610 * 120.24468 * 180.02562 * 3 2 1 5 5 C 1.38655 * 120.50649 * 359.97438 * 4 3 2 6 6 C 1.37597 * 120.24422 * 359.75943 * 5 4 3 7 7 C 1.50703 * 120.12906 * 180.27857 * 6 5 4 8 8 C 1.52999 * 109.47323 * 265.23961 * 7 6 5 9 9 C 1.47202 * 109.47260 * 179.97438 * 8 7 6 10 10 N 6.97472 * 128.85043 * 195.08310 * 2 1 3 11 11 C 1.40697 * 120.12707 * 180.02562 * 2 1 3 12 12 C 1.41395 * 120.24619 * 359.97138 * 11 2 1 13 13 H 1.07995 * 120.00324 * 131.96901 * 12 11 2 14 14 C 1.39952 * 120.00090 * 311.69075 * 12 11 2 15 15 N 1.30829 * 119.99537 * 341.87016 * 14 12 11 16 16 Si 1.86794 * 120.00107 * 161.86693 * 14 12 11 17 17 H 1.48494 * 109.47207 * 60.00021 * 16 14 12 18 18 H 1.48497 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47206 * 300.00170 * 16 14 12 20 20 H 1.09000 * 109.46932 * 271.20589 * 1 2 3 21 21 H 1.08996 * 109.47134 * 31.20741 * 1 2 3 22 22 H 1.09004 * 109.47200 * 151.21214 * 1 2 3 23 23 H 1.07998 * 119.87385 * 0.04779 * 3 2 1 24 24 H 1.08005 * 119.74824 * 180.02562 * 4 3 2 25 25 H 1.07995 * 119.87653 * 180.02562 * 5 4 3 26 26 H 1.09005 * 109.46758 * 25.23730 * 7 6 5 27 27 H 1.09004 * 109.47158 * 145.23313 * 7 6 5 28 28 H 1.08996 * 109.47166 * 299.99763 * 8 7 6 29 29 H 1.08999 * 109.47102 * 59.99688 * 8 7 6 30 30 H 0.97004 * 119.99428 * 185.16729 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1905 0.0000 4 6 3.5840 1.1933 -0.0005 5 6 4.2903 0.0002 -0.0005 6 6 3.6205 -1.2017 0.0050 7 6 4.3908 -2.4970 0.0113 8 6 4.5490 -3.0034 -1.4238 9 6 5.3020 -4.2682 -1.4177 10 7 5.8822 -5.2447 -1.4135 11 6 2.2132 -1.2169 -0.0005 12 6 1.5143 -2.4460 -0.0005 13 1 1.7906 -3.2245 -0.6961 14 6 0.4680 -2.6560 0.9050 15 7 0.3579 -1.8967 1.9647 16 14 -0.7712 -4.0201 0.6004 17 1 -0.0677 -5.3270 0.5558 18 1 -1.7723 -4.0334 1.6971 19 1 -1.4592 -3.7839 -0.6943 20 1 -0.3633 0.0216 1.0274 21 1 -0.3633 0.8789 -0.5325 22 1 -0.3634 -0.9007 -0.4949 23 1 1.6579 2.1257 0.0008 24 1 4.1179 2.1322 -0.0001 25 1 5.3702 0.0143 -0.0005 26 1 5.3754 -2.3320 0.4490 27 1 3.8508 -3.2380 0.6007 28 1 3.5645 -3.1683 -1.8614 29 1 5.0890 -2.2623 -2.0131 30 1 -0.3211 -2.0887 2.6304 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307117876.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:11 Heat of formation + Delta-G solvation = 13.053500 kcal Electronic energy + Delta-G solvation = -13735.704684 eV Core-core repulsion = 11494.403485 eV Total energy + Delta-G solvation = -2241.301199 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.83933 -37.74002 -35.46453 -34.84600 -32.18646 -30.81843 -28.07591 -26.42839 -25.04237 -22.06461 -20.69967 -18.86705 -18.25249 -17.01713 -16.22076 -16.07785 -15.25991 -15.22251 -14.65113 -14.18949 -14.16119 -13.74211 -13.42165 -13.08448 -13.04508 -12.94045 -12.78275 -12.57404 -12.39434 -12.09376 -11.84604 -11.68463 -11.18252 -11.02223 -10.56998 -8.95734 -8.74945 -8.37745 -6.19758 1.07900 1.19927 1.46225 1.51237 1.54168 1.86121 1.87844 2.32237 2.94785 3.20106 3.66642 4.35462 4.52097 4.55882 4.60469 4.74054 4.84186 4.85496 5.06274 5.20363 5.26911 5.29613 5.40677 5.45036 5.58093 5.67344 6.03076 6.19420 6.21760 6.35626 6.57835 6.65757 6.85016 7.16813 7.22686 8.60973 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.013957 C = 0.008644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.515740 B = 2005.661558 C = 3238.580001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.152 4.152 3 C -0.122 4.122 4 C -0.213 4.213 5 C -0.108 4.108 6 C -0.167 4.167 7 C -0.043 4.043 8 C -0.013 4.013 9 C 0.244 3.756 10 N -0.505 5.505 11 C 0.097 3.903 12 C -0.502 4.502 13 H 0.082 0.918 14 C 0.053 3.947 15 N -0.839 5.839 16 Si 0.943 3.057 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.262 1.262 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.104 0.896 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.133 0.867 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 2.714 -3.908 5.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.153 4.153 3 C -0.140 4.140 4 C -0.232 4.232 5 C -0.126 4.126 6 C -0.168 4.168 7 C -0.082 4.082 8 C -0.053 4.053 9 C -0.072 4.072 10 N -0.183 5.183 11 C 0.096 3.904 12 C -0.533 4.533 13 H 0.099 0.901 14 C -0.159 4.159 15 N -0.468 5.468 16 Si 0.767 3.233 17 H -0.194 1.194 18 H -0.206 1.206 19 H -0.187 1.187 20 H 0.068 0.932 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.122 0.878 24 H 0.135 0.865 25 H 0.142 0.858 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.663 1.314 -3.736 4.772 hybrid contribution -1.104 -0.220 0.319 1.170 sum 1.558 1.094 -3.416 3.911 Atomic orbital electron populations 1.20467 0.93192 0.99339 1.00236 1.20260 0.95486 0.93467 1.06101 1.20843 0.94897 0.96497 1.01804 1.20860 0.93641 0.97739 1.10911 1.20863 0.99037 0.92012 1.00660 1.20047 0.93407 0.94002 1.09384 1.20023 0.98944 0.94787 0.94399 1.19465 0.99510 0.86347 0.99981 1.29775 0.92000 0.94430 0.91023 1.81153 1.12715 1.13488 1.10952 1.17561 0.91214 0.92668 0.88981 1.19374 1.14543 1.00673 1.18729 0.90056 1.26138 0.97714 0.97915 0.94135 1.69852 1.31864 1.37411 1.07681 0.85844 0.79017 0.79657 0.78778 1.19372 1.20635 1.18655 0.93170 0.93950 0.93510 0.87808 0.86497 0.85794 0.90917 0.92517 0.87014 0.84967 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.35 8.30 71.24 0.59 -2.75 16 2 C -0.15 -6.99 5.58 -19.40 -0.11 -7.10 16 3 C -0.12 -5.05 9.68 22.22 0.22 -4.84 16 4 C -0.21 -7.98 10.05 22.46 0.23 -7.75 16 5 C -0.11 -3.92 9.66 22.22 0.21 -3.71 16 6 C -0.17 -6.66 5.19 -19.40 -0.10 -6.76 16 7 C -0.04 -1.43 4.79 29.85 0.14 -1.29 16 8 C -0.01 -0.36 5.67 28.79 0.16 -0.20 16 9 C 0.24 7.38 15.43 89.44 1.38 8.76 16 10 N -0.50 -17.74 18.54 20.00 0.37 -17.37 16 11 C 0.10 4.51 5.20 -21.29 -0.11 4.40 16 12 C -0.50 -23.69 6.87 23.46 0.16 -23.53 16 13 H 0.08 3.65 6.81 -2.91 -0.02 3.63 16 14 C 0.05 2.52 3.54 85.26 0.30 2.82 16 15 N -0.84 -42.14 10.83 21.83 0.24 -41.91 16 16 Si 0.94 37.49 29.60 68.60 2.03 39.52 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 H 0.05 2.35 6.76 -2.39 -0.02 2.33 16 21 H 0.04 1.62 8.09 -2.39 -0.02 1.60 16 22 H 0.05 2.12 6.34 -2.38 -0.02 2.10 16 23 H 0.10 3.85 8.06 -2.91 -0.02 3.83 16 24 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 25 H 0.12 3.67 8.06 -2.91 -0.02 3.64 16 26 H 0.07 2.14 8.05 -2.38 -0.02 2.12 16 27 H 0.06 2.18 7.31 -2.38 -0.02 2.16 16 28 H 0.11 3.13 7.09 -2.39 -0.02 3.11 16 29 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.28 13.14 8.30 -92.71 -0.77 12.37 16 Total: -1.00 -54.89 261.34 6.85 -48.03 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.14 Total: 13.65 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 3.08 Total: -41.93 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.61 Total: -59.27 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -54.89 6.85 -48.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307117876.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.088 kcal (2) G-P(sol) polarization free energy of solvation -54.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds