Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99712 * 2 1 4 4 H 1.09000 * 110.45586 * 328.84479 * 3 2 1 5 5 C 1.54473 * 110.51682 * 91.44990 * 3 2 1 6 6 O 1.44432 * 104.80305 * 94.66531 * 5 3 2 7 7 C 1.44429 * 105.27282 * 40.51249 * 6 5 3 8 8 C 1.54477 * 104.89890 * 319.43504 * 7 6 5 9 9 H 1.09004 * 110.50981 * 265.38478 * 8 7 6 10 10 N 1.46501 * 110.51260 * 142.68163 * 8 7 6 11 11 C 1.34775 * 120.00170 * 86.44605 * 10 8 7 12 12 O 1.21689 * 120.00066 * 0.02562 * 11 10 8 13 13 C 1.46373 * 120.00331 * 180.02562 * 11 10 8 14 14 H 1.08001 * 119.99375 * 353.94121 * 13 11 10 15 15 C 1.40046 * 120.00485 * 173.93981 * 13 11 10 16 16 N 1.30668 * 119.99699 * 6.15089 * 15 13 11 17 17 Si 1.86796 * 120.00266 * 186.14742 * 15 13 11 18 18 H 1.48503 * 109.47112 * 94.98682 * 17 15 13 19 19 H 1.48501 * 109.47507 * 214.98467 * 17 15 13 20 20 H 1.48503 * 109.47202 * 334.98653 * 17 15 13 21 21 H 1.09001 * 109.47276 * 60.00273 * 1 2 3 22 22 H 1.08997 * 109.46868 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47334 * 300.00257 * 1 2 3 24 24 H 1.08998 * 110.37046 * 335.83976 * 5 3 2 25 25 H 1.08998 * 110.37678 * 213.49557 * 5 3 2 26 26 H 1.08999 * 110.37136 * 78.32045 * 7 6 5 27 27 H 1.09002 * 110.36701 * 200.54642 * 7 6 5 28 28 H 0.96999 * 119.99667 * 266.45365 * 10 8 7 29 29 H 0.97003 * 120.00325 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3667 2.0090 -0.5284 5 6 2.2638 1.7852 1.4463 6 8 3.6378 1.4316 1.7168 7 6 4.3552 1.7347 0.5004 8 6 3.4200 1.2710 -0.6383 9 1 3.6733 0.2583 -0.9521 10 7 3.4951 2.1951 -1.7726 11 6 4.4452 2.0304 -2.7143 12 8 5.2404 1.1138 -2.6225 13 6 4.5206 2.9539 -3.8473 14 1 3.7579 3.7066 -3.9820 15 6 5.5817 2.8616 -4.7567 16 7 6.4374 1.8785 -4.6644 17 14 5.7735 4.1437 -6.1015 18 1 6.7179 5.1971 -5.6500 19 1 6.3028 3.4978 -7.3295 20 1 4.4525 4.7557 -6.3942 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.5966 1.2720 2.1387 25 1 2.1288 2.8645 1.5173 26 1 4.5408 2.8062 0.4264 27 1 5.2954 1.1841 0.4673 28 1 2.8611 2.9255 -1.8459 29 1 7.1722 1.8142 -5.2944 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307153749.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = -125.828421 kcal Electronic energy + Delta-G solvation = -14699.170079 eV Core-core repulsion = 12008.704494 eV Total energy + Delta-G solvation = -2690.465585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.64067 -37.11071 -36.68389 -33.30517 -32.31831 -29.54854 -28.17872 -26.52944 -25.89161 -22.54919 -21.05201 -19.67670 -17.59392 -16.58561 -16.16639 -15.59512 -15.29234 -15.00720 -14.65338 -14.10718 -13.75675 -13.44776 -12.66822 -12.37248 -11.94994 -11.66470 -11.50178 -11.29757 -11.12670 -10.93315 -10.56992 -10.50970 -10.25254 -9.81796 -9.30308 -8.88960 -7.70859 -7.63985 -6.24620 -4.69795 3.11315 3.18523 3.21900 3.69723 4.07618 4.20342 4.51236 4.74747 4.90479 5.06746 5.18855 5.30781 5.39017 5.50711 5.63430 5.68241 5.73294 5.81440 5.95578 6.34909 6.50128 6.91944 7.31269 7.39195 7.81404 7.98521 8.25561 8.97275 9.42231 10.53419 10.71186 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046888 B = 0.007377 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.023984 B = 3794.746916 C = 4000.346097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.047 3.953 4 H 0.079 0.921 5 C 0.027 3.973 6 O -0.374 6.374 7 C 0.037 3.963 8 C 0.131 3.869 9 H 0.102 0.898 10 N -0.756 5.756 11 C 0.554 3.446 12 O -0.576 6.576 13 C -0.545 4.545 14 H 0.069 0.931 15 C 0.088 3.912 16 N -0.765 5.765 17 Si 0.909 3.091 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.042 0.958 22 H 0.085 0.915 23 H 0.038 0.962 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.380 0.620 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.969 2.203 7.265 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C -0.012 4.012 4 H 0.097 0.903 5 C -0.051 4.051 6 O -0.293 6.293 7 C -0.041 4.041 8 C 0.023 3.977 9 H 0.120 0.880 10 N -0.412 5.412 11 C 0.359 3.641 12 O -0.458 6.458 13 C -0.582 4.582 14 H 0.087 0.913 15 C -0.132 4.132 16 N -0.394 5.394 17 Si 0.734 3.266 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.061 0.939 22 H 0.104 0.896 23 H 0.057 0.943 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.212 0.788 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.999 1.150 7.447 11.738 hybrid contribution -0.573 1.333 -0.870 1.691 sum -9.572 2.483 6.578 11.877 Atomic orbital electron populations 1.22803 0.81485 1.02713 0.99760 1.88011 1.19256 1.26864 1.94787 1.23871 0.96015 0.85392 0.95960 0.90344 1.23832 0.85551 0.99370 0.96299 1.89119 1.18706 1.86207 1.35219 1.23994 0.96685 1.00653 0.82800 1.21848 0.90415 0.97569 0.87837 0.88002 1.46213 1.37746 1.32211 1.25077 1.18281 0.78992 0.85379 0.81454 1.90616 1.42288 1.34652 1.78231 1.20853 1.10751 1.17528 1.09094 0.91326 1.25702 0.94809 0.95159 0.97555 1.70019 1.10809 1.26414 1.32126 0.86341 0.79165 0.80931 0.80209 1.19773 1.20417 1.18899 0.93908 0.89648 0.94316 0.89050 0.91738 0.91864 0.88325 0.78768 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.87 101.05 1.10 1.43 15 2 O -0.37 -6.01 10.34 -35.23 -0.36 -6.38 15 3 C 0.05 0.73 3.35 -25.01 -0.08 0.65 15 4 H 0.08 1.08 7.39 -51.93 -0.38 0.69 15 5 C 0.03 0.38 7.38 37.93 0.28 0.66 15 6 O -0.37 -6.64 11.65 -35.23 -0.41 -7.05 15 7 C 0.04 0.70 7.34 37.93 0.28 0.98 15 8 C 0.13 2.62 3.23 -66.21 -0.21 2.41 15 9 H 0.10 2.39 7.54 -51.93 -0.39 1.99 15 10 N -0.76 -16.59 5.11 -53.54 -0.27 -16.86 15 11 C 0.55 15.52 7.74 -12.99 -0.10 15.42 15 12 O -0.58 -18.44 14.76 5.20 0.08 -18.37 15 13 C -0.55 -15.13 9.53 -35.63 -0.34 -15.47 15 14 H 0.07 1.73 7.85 -52.49 -0.41 1.32 15 15 C 0.09 2.42 5.49 -17.37 -0.10 2.33 15 16 N -0.77 -22.74 11.85 55.55 0.66 -22.08 15 17 Si 0.91 19.84 29.56 -169.99 -5.03 14.82 15 18 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 15 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 21 H 0.04 0.46 8.10 -51.93 -0.42 0.04 15 22 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 15 24 H 0.09 1.13 8.09 -51.93 -0.42 0.71 15 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 26 H 0.06 1.16 8.06 -51.93 -0.42 0.74 15 27 H 0.10 1.98 8.14 -51.93 -0.42 1.55 15 28 H 0.38 7.16 8.30 -40.82 -0.34 6.82 15 29 H 0.27 7.25 8.29 -40.82 -0.34 6.91 15 LS Contribution 255.74 15.07 3.85 3.85 Total: -1.00 -34.07 255.74 -4.27 -38.34 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.61 Total: 5.32 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 0.82 Total: 8.40 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.38 Total: -38.94 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.70 Total: -31.79 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.07 -4.27 -38.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307153749.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.490 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds