Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99712 * 2 1 4 4 H 1.09000 * 110.45586 * 328.84479 * 3 2 1 5 5 C 1.54473 * 110.51682 * 91.44990 * 3 2 1 6 6 O 1.44432 * 104.80305 * 94.66531 * 5 3 2 7 7 C 1.44429 * 105.27282 * 40.51249 * 6 5 3 8 8 C 1.54477 * 104.89890 * 319.43504 * 7 6 5 9 9 H 1.09004 * 110.50981 * 265.38478 * 8 7 6 10 10 N 1.46501 * 110.51260 * 142.68163 * 8 7 6 11 11 C 1.34775 * 120.00170 * 86.44605 * 10 8 7 12 12 O 1.21689 * 120.00066 * 0.02562 * 11 10 8 13 13 C 1.46373 * 120.00331 * 180.02562 * 11 10 8 14 14 H 1.08001 * 119.99375 * 353.94121 * 13 11 10 15 15 C 1.40046 * 120.00485 * 173.93981 * 13 11 10 16 16 N 1.30668 * 119.99699 * 6.15089 * 15 13 11 17 17 Si 1.86796 * 120.00266 * 186.14742 * 15 13 11 18 18 H 1.48503 * 109.47112 * 94.98682 * 17 15 13 19 19 H 1.48501 * 109.47507 * 214.98467 * 17 15 13 20 20 H 1.48503 * 109.47202 * 334.98653 * 17 15 13 21 21 H 1.09001 * 109.47276 * 60.00273 * 1 2 3 22 22 H 1.08997 * 109.46868 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47334 * 300.00257 * 1 2 3 24 24 H 1.08998 * 110.37046 * 335.83976 * 5 3 2 25 25 H 1.08998 * 110.37678 * 213.49557 * 5 3 2 26 26 H 1.08999 * 110.37136 * 78.32045 * 7 6 5 27 27 H 1.09002 * 110.36701 * 200.54642 * 7 6 5 28 28 H 0.96999 * 119.99667 * 266.45365 * 10 8 7 29 29 H 0.97003 * 120.00325 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3667 2.0090 -0.5284 5 6 2.2638 1.7852 1.4463 6 8 3.6378 1.4316 1.7168 7 6 4.3552 1.7347 0.5004 8 6 3.4200 1.2710 -0.6383 9 1 3.6733 0.2583 -0.9521 10 7 3.4951 2.1951 -1.7726 11 6 4.4452 2.0304 -2.7143 12 8 5.2404 1.1138 -2.6225 13 6 4.5206 2.9539 -3.8473 14 1 3.7579 3.7066 -3.9820 15 6 5.5817 2.8616 -4.7567 16 7 6.4374 1.8785 -4.6644 17 14 5.7735 4.1437 -6.1015 18 1 6.7179 5.1971 -5.6500 19 1 6.3028 3.4978 -7.3295 20 1 4.4525 4.7557 -6.3942 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.5966 1.2720 2.1387 25 1 2.1288 2.8645 1.5173 26 1 4.5408 2.8062 0.4264 27 1 5.2954 1.1841 0.4673 28 1 2.8611 2.9255 -1.8459 29 1 7.1722 1.8142 -5.2944 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307153749.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = -154.274709 kcal Electronic energy + Delta-G solvation = -14700.403603 eV Core-core repulsion = 12008.704494 eV Total energy + Delta-G solvation = -2691.699109 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05486 -39.03003 -37.99141 -35.18832 -34.42235 -31.05102 -29.68127 -28.02941 -27.37316 -24.00146 -22.57301 -21.55545 -19.43866 -18.03903 -17.65008 -17.29182 -16.81447 -16.35188 -16.02997 -15.84686 -15.06607 -14.92538 -14.61018 -14.20524 -13.40347 -13.12612 -12.93134 -12.73011 -12.70201 -12.58970 -12.49565 -12.00441 -11.89154 -11.11218 -10.94369 -10.55120 -9.90997 -9.56396 -8.31379 -6.87360 1.41580 1.42436 1.58678 2.21370 2.43196 2.50577 2.86208 3.31706 3.43366 3.57427 3.85679 3.89645 4.16384 4.31814 4.47886 4.52253 4.57601 4.71569 4.80452 4.84532 4.85915 5.31890 5.58537 5.84003 6.08470 6.22146 6.26684 6.85612 7.48525 8.45761 8.65123 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046888 B = 0.007377 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.023984 B = 3794.746916 C = 4000.346097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.404 6.404 3 C 0.057 3.943 4 H 0.104 0.896 5 C 0.027 3.973 6 O -0.387 6.387 7 C 0.046 3.954 8 C 0.123 3.877 9 H 0.057 0.943 10 N -0.740 5.740 11 C 0.538 3.462 12 O -0.629 6.629 13 C -0.571 4.571 14 H 0.092 0.908 15 C 0.029 3.971 16 N -0.821 5.821 17 Si 1.000 3.000 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.246 1.246 21 H 0.049 0.951 22 H 0.097 0.903 23 H 0.065 0.935 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.399 0.601 29 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.962 4.293 7.304 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.323 6.323 3 C -0.002 4.002 4 H 0.122 0.878 5 C -0.049 4.049 6 O -0.306 6.306 7 C -0.032 4.032 8 C 0.016 3.984 9 H 0.075 0.925 10 N -0.396 5.396 11 C 0.343 3.657 12 O -0.516 6.516 13 C -0.607 4.607 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.451 5.451 17 Si 0.819 3.181 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.169 1.169 21 H 0.068 0.932 22 H 0.115 0.885 23 H 0.084 0.916 24 H 0.133 0.867 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.234 0.766 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.065 3.262 7.530 13.776 hybrid contribution -0.047 0.609 -0.810 1.014 sum -11.113 3.870 6.720 13.551 Atomic orbital electron populations 1.23076 0.78843 1.04159 1.01368 1.87972 1.22150 1.27159 1.95030 1.23750 0.93561 0.86091 0.96783 0.87788 1.24125 0.83780 1.01528 0.95495 1.89102 1.20663 1.86604 1.34186 1.23706 0.95789 1.00530 0.83185 1.21868 0.94295 0.94752 0.87499 0.92511 1.45752 1.36588 1.32758 1.24471 1.18680 0.79384 0.84892 0.82725 1.90575 1.44641 1.36698 1.79673 1.21414 1.11860 1.17994 1.09448 0.88986 1.26993 0.93843 0.97441 1.00376 1.70194 1.11871 1.29164 1.33837 0.84974 0.79966 0.77240 0.75901 1.18796 1.19995 1.16920 0.93250 0.88478 0.91642 0.86682 0.88643 0.91024 0.90760 0.76610 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.87 113.37 1.23 1.66 15 2 O -0.40 -12.54 10.34 -148.98 -1.54 -14.09 15 3 C 0.06 1.68 3.35 31.71 0.11 1.79 15 4 H 0.10 2.51 7.39 -2.39 -0.02 2.49 15 5 C 0.03 0.69 7.38 72.48 0.53 1.23 15 6 O -0.39 -13.29 11.65 -148.98 -1.74 -15.03 15 7 C 0.05 1.78 7.34 72.48 0.53 2.31 15 8 C 0.12 5.01 3.23 46.11 0.15 5.16 15 9 H 0.06 2.83 7.54 -2.39 -0.02 2.81 15 10 N -0.74 -32.53 5.11 -441.53 -2.26 -34.79 15 11 C 0.54 30.92 7.74 86.36 0.67 31.59 15 12 O -0.63 -42.34 14.76 -4.31 -0.06 -42.40 15 13 C -0.57 -31.67 9.53 24.83 0.24 -31.43 15 14 H 0.09 4.50 7.85 -2.91 -0.02 4.47 15 15 C 0.03 1.58 5.49 85.30 0.47 2.05 15 16 N -0.82 -50.14 11.85 21.83 0.26 -49.89 15 17 Si 1.00 40.18 29.56 68.60 2.03 42.21 15 18 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 19 H -0.27 -10.76 7.11 99.48 0.71 -10.06 15 20 H -0.25 -9.06 7.11 99.48 0.71 -8.35 15 21 H 0.05 0.92 8.10 -2.39 -0.02 0.90 15 22 H 0.10 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 15 24 H 0.12 2.40 8.09 -2.39 -0.02 2.38 15 25 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.07 2.61 8.06 -2.39 -0.02 2.59 15 27 H 0.07 3.16 8.14 -2.39 -0.02 3.14 15 28 H 0.40 14.42 8.30 -92.71 -0.77 13.65 15 29 H 0.27 15.19 8.29 -92.71 -0.77 14.42 15 Total: -1.00 -77.12 255.74 1.00 -76.12 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.39 Total: 23.51 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 3.93 Total: 14.35 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -2.00 Total: -84.67 kcal Atomic # 8 Polarization: -68.17 SS G_CDS: -3.34 Total: -71.51 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -77.12 1.00 -76.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307153749.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.156 kcal (2) G-P(sol) polarization free energy of solvation -77.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds