Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47171 * 2 1 4 4 C 1.38385 * 119.92712 * 265.00112 * 3 2 1 5 5 C 1.38345 * 120.30427 * 179.97438 * 4 3 2 6 6 C 1.37961 * 120.15100 * 359.97438 * 5 4 3 7 7 C 1.39611 * 119.84773 * 0.02562 * 6 5 4 8 8 C 1.43204 * 120.15116 * 179.97438 * 7 6 5 9 9 N 5.95818 * 103.05549 * 35.84979 * 2 1 3 10 10 C 1.37928 * 119.92261 * 84.98627 * 3 2 1 11 11 C 1.50700 * 120.07854 * 0.03904 * 10 3 2 12 12 C 1.50706 * 109.47273 * 270.00703 * 11 10 3 13 13 H 1.08006 * 119.99496 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99919 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99796 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46780 * 60.00156 * 16 14 12 18 18 H 1.48498 * 109.47196 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47355 * 300.00359 * 16 14 12 20 20 H 1.08997 * 109.47748 * 59.99493 * 1 2 3 21 21 H 1.09004 * 109.47243 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46846 * 299.99555 * 1 2 3 23 23 H 1.09006 * 109.46846 * 240.00445 * 2 1 3 24 24 H 1.08995 * 109.47070 * 120.00814 * 2 1 3 25 25 H 1.07996 * 119.84626 * 0.25701 * 4 3 2 26 26 H 1.07999 * 119.92010 * 180.02562 * 5 4 3 27 27 H 1.08010 * 120.07795 * 180.02562 * 6 5 4 28 28 H 1.09006 * 109.46665 * 30.00015 * 11 10 3 29 29 H 1.08995 * 109.47183 * 150.00374 * 11 10 3 30 30 H 0.97000 * 120.00268 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3610 2.0368 -1.1948 5 6 2.8224 3.3410 -1.2039 6 6 2.9573 4.0366 -0.0201 7 6 2.6276 3.4212 1.1889 8 6 2.7657 4.1370 2.4215 9 7 2.8759 4.7046 3.3993 10 6 2.1632 2.1042 1.1908 11 6 1.8053 1.4316 2.4910 12 6 0.3512 1.6782 2.8007 13 1 -0.2532 2.2639 2.1238 14 6 -0.2075 1.1562 3.9480 15 7 0.5284 0.4427 4.7719 16 14 -2.0097 1.4626 4.3322 17 1 -2.8497 0.9086 3.2399 18 1 -2.3627 0.7986 5.6127 19 1 -2.2496 2.9233 4.4488 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.2525 1.4985 -2.1247 26 1 3.0767 3.8159 -2.1399 27 1 3.3173 5.0549 -0.0287 28 1 1.9818 0.3593 2.4059 29 1 2.4216 1.8388 3.2925 30 1 0.1352 0.0751 5.5789 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307264199.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = 30.882483 kcal Electronic energy + Delta-G solvation = -13769.828547 eV Core-core repulsion = 11529.300471 eV Total energy + Delta-G solvation = -2240.528076 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.33814 -35.80645 -34.11896 -32.95875 -31.36019 -29.14835 -27.31299 -23.77015 -23.44054 -22.16169 -19.80970 -17.58501 -16.40918 -15.58418 -15.36850 -14.50179 -13.88725 -13.48593 -13.07185 -12.90988 -12.45976 -12.43653 -12.12450 -11.96387 -11.51065 -11.41699 -11.24332 -11.03491 -10.81571 -10.59998 -10.22418 -10.11672 -9.67121 -9.45218 -8.45249 -8.29840 -7.97507 -6.09977 -4.13098 1.35311 1.88328 3.28872 3.33868 3.36642 3.43274 3.58015 4.35489 4.50379 4.62011 5.20249 5.26216 5.27728 5.50559 5.67952 5.74907 6.01047 6.07277 6.08469 6.32508 6.47998 6.55241 6.70723 6.73381 6.83253 7.00686 7.22346 7.33342 7.48966 7.63359 7.84013 8.19651 8.24741 8.88978 9.49467 10.99902 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.011914 C = 0.009184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.519392 B = 2349.663258 C = 3048.004909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.076 4.076 3 C -0.087 4.087 4 C -0.093 4.093 5 C -0.147 4.147 6 C -0.081 4.081 7 C -0.040 4.040 8 C 0.273 3.727 9 N -0.435 5.435 10 C 0.013 3.987 11 C 0.041 3.959 12 C -0.508 4.508 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.276 1.276 20 H 0.040 0.960 21 H 0.045 0.955 22 H 0.094 0.906 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.043 0.957 29 H 0.028 0.972 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 0.761 -12.196 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.113 4.113 3 C -0.088 4.088 4 C -0.112 4.112 5 C -0.165 4.165 6 C -0.102 4.102 7 C -0.044 4.044 8 C -0.042 4.042 9 N -0.111 5.111 10 C 0.010 3.990 11 C 0.004 3.996 12 C -0.546 4.546 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.202 1.202 20 H 0.059 0.941 21 H 0.064 0.936 22 H 0.113 0.887 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.782 1.540 -10.495 10.967 hybrid contribution -1.067 -0.035 -0.096 1.072 sum 1.715 1.506 -10.591 10.834 Atomic orbital electron populations 1.21920 0.94538 1.01275 1.03655 1.20455 0.96858 0.92003 1.01995 1.19732 0.99952 0.97154 0.91923 1.21164 0.97830 0.94830 0.97403 1.20784 1.03450 0.95065 0.97247 1.20989 0.98741 0.99268 0.91156 1.15987 1.07551 0.93721 0.87097 1.25514 0.93062 0.92768 0.92809 1.81094 1.09628 1.10454 1.09924 1.20663 0.89156 0.91192 0.97943 1.18526 0.97347 0.96366 0.87350 1.20812 0.93713 1.33484 1.06609 0.92295 1.24953 0.97966 0.94980 0.95985 1.69926 1.36033 1.34341 1.12344 0.86664 0.85104 0.78642 0.77782 1.19894 1.21183 1.20184 0.94116 0.93557 0.88737 0.92605 0.90040 0.86329 0.86086 0.86089 0.93935 0.95403 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.89 37.16 0.37 -2.28 16 2 C -0.08 -1.24 5.56 -27.89 -0.15 -1.39 16 3 C -0.09 -1.50 5.13 -104.69 -0.54 -2.04 16 4 C -0.09 -1.32 9.67 -39.49 -0.38 -1.70 16 5 C -0.15 -1.94 10.03 -39.64 -0.40 -2.34 16 6 C -0.08 -1.21 9.76 -39.17 -0.38 -1.59 16 7 C -0.04 -0.76 5.73 -106.93 -0.61 -1.37 16 8 C 0.27 5.80 13.80 -22.47 -0.31 5.49 16 9 N -0.44 -9.97 18.54 41.84 0.78 -9.19 16 10 C 0.01 0.26 5.10 -104.21 -0.53 -0.27 16 11 C 0.04 0.99 4.29 -29.03 -0.12 0.87 16 12 C -0.51 -13.41 6.95 -34.44 -0.24 -13.65 16 13 H 0.06 1.55 7.47 -52.48 -0.39 1.15 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.09 1.93 5.45 -51.93 -0.28 1.65 16 23 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 24 H 0.08 1.46 6.15 -51.93 -0.32 1.14 16 25 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 26 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 28 H 0.04 1.06 6.02 -51.93 -0.31 0.75 16 29 H 0.03 0.75 7.09 -51.93 -0.37 0.39 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 263.05 15.07 3.96 3.96 Total: -1.00 -29.20 263.05 -6.29 -35.49 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -3.34 Total: -2.95 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -3.40 Total: -18.63 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 1.51 Total: -34.11 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.20 -6.29 -35.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307264199.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.372 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds