Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50693 * 109.47171 * 2 1 4 4 C 1.38385 * 119.92712 * 265.00112 * 3 2 1 5 5 C 1.38345 * 120.30427 * 179.97438 * 4 3 2 6 6 C 1.37961 * 120.15100 * 359.97438 * 5 4 3 7 7 C 1.39611 * 119.84773 * 0.02562 * 6 5 4 8 8 C 1.43204 * 120.15116 * 179.97438 * 7 6 5 9 9 N 5.95818 * 103.05549 * 35.84979 * 2 1 3 10 10 C 1.37928 * 119.92261 * 84.98627 * 3 2 1 11 11 C 1.50700 * 120.07854 * 0.03904 * 10 3 2 12 12 C 1.50706 * 109.47273 * 270.00703 * 11 10 3 13 13 H 1.08006 * 119.99496 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99919 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00224 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99796 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46780 * 60.00156 * 16 14 12 18 18 H 1.48498 * 109.47196 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47355 * 300.00359 * 16 14 12 20 20 H 1.08997 * 109.47748 * 59.99493 * 1 2 3 21 21 H 1.09004 * 109.47243 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46846 * 299.99555 * 1 2 3 23 23 H 1.09006 * 109.46846 * 240.00445 * 2 1 3 24 24 H 1.08995 * 109.47070 * 120.00814 * 2 1 3 25 25 H 1.07996 * 119.84626 * 0.25701 * 4 3 2 26 26 H 1.07999 * 119.92010 * 180.02562 * 5 4 3 27 27 H 1.08010 * 120.07795 * 180.02562 * 6 5 4 28 28 H 1.09006 * 109.46665 * 30.00015 * 11 10 3 29 29 H 1.08995 * 109.47183 * 150.00374 * 11 10 3 30 30 H 0.97000 * 120.00268 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3610 2.0368 -1.1948 5 6 2.8224 3.3410 -1.2039 6 6 2.9573 4.0366 -0.0201 7 6 2.6276 3.4212 1.1889 8 6 2.7657 4.1370 2.4215 9 7 2.8759 4.7046 3.3993 10 6 2.1632 2.1042 1.1908 11 6 1.8053 1.4316 2.4910 12 6 0.3512 1.6782 2.8007 13 1 -0.2532 2.2639 2.1238 14 6 -0.2075 1.1562 3.9480 15 7 0.5284 0.4427 4.7719 16 14 -2.0097 1.4626 4.3322 17 1 -2.8497 0.9086 3.2399 18 1 -2.3627 0.7986 5.6127 19 1 -2.2496 2.9233 4.4488 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.2525 1.4985 -2.1247 26 1 3.0767 3.8159 -2.1399 27 1 3.3173 5.0549 -0.0287 28 1 1.9818 0.3593 2.4059 29 1 2.4216 1.8388 3.2925 30 1 0.1352 0.0751 5.5789 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307264199.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = 14.886943 kcal Electronic energy + Delta-G solvation = -13770.522166 eV Core-core repulsion = 11529.300471 eV Total energy + Delta-G solvation = -2241.221695 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67660 -37.44969 -35.72498 -34.60580 -32.98408 -30.49924 -29.03784 -25.49844 -24.79115 -23.67956 -21.16689 -18.98590 -18.49938 -16.97180 -16.83713 -16.20717 -15.26974 -15.03586 -14.46661 -14.38576 -14.31464 -13.96400 -13.71246 -13.46340 -13.23085 -13.06137 -12.77511 -12.55344 -12.42439 -12.32283 -11.76842 -11.57577 -11.50103 -11.13545 -10.56114 -9.59047 -9.36061 -8.20114 -6.28814 0.02292 0.62310 1.35960 1.38307 1.45056 1.78275 2.10472 2.37726 3.07420 3.12159 3.15565 4.00373 4.17009 4.25256 4.45145 4.50302 4.77434 4.78038 4.86318 5.01903 5.15198 5.20054 5.31483 5.36434 5.48278 5.55891 5.66750 5.73333 5.81113 5.99091 6.10422 6.20602 6.61585 6.80583 7.36613 8.89378 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.025027 B = 0.011914 C = 0.009184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.519392 B = 2349.663258 C = 3048.004909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.075 4.075 3 C -0.098 4.098 4 C -0.076 4.076 5 C -0.126 4.126 6 C -0.070 4.070 7 C -0.067 4.067 8 C 0.283 3.717 9 N -0.484 5.484 10 C -0.019 4.019 11 C 0.053 3.947 12 C -0.503 4.503 13 H 0.057 0.943 14 C 0.008 3.992 15 N -0.928 5.928 16 Si 0.948 3.052 17 H -0.256 1.256 18 H -0.285 1.285 19 H -0.279 1.279 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.051 0.949 25 H 0.161 0.839 26 H 0.172 0.828 27 H 0.149 0.851 28 H 0.026 0.974 29 H -0.015 1.015 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 1.311 -16.197 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 C -0.098 4.098 4 C -0.094 4.094 5 C -0.143 4.143 6 C -0.090 4.090 7 C -0.071 4.071 8 C -0.030 4.030 9 N -0.160 5.160 10 C -0.022 4.022 11 C 0.016 3.984 12 C -0.541 4.541 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.568 5.568 16 Si 0.773 3.227 17 H -0.180 1.180 18 H -0.210 1.210 19 H -0.205 1.205 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.069 0.931 25 H 0.179 0.821 26 H 0.189 0.811 27 H 0.167 0.833 28 H 0.044 0.956 29 H 0.003 0.997 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.497 2.093 -14.513 14.874 hybrid contribution -0.915 -0.204 0.999 1.370 sum 1.581 1.889 -13.514 13.737 Atomic orbital electron populations 1.21842 0.95076 1.01613 1.02570 1.20454 0.96367 0.91969 1.02418 1.19868 1.00464 0.97421 0.92046 1.21621 0.95162 0.95256 0.97380 1.21365 1.00391 0.94358 0.98220 1.21362 0.97143 1.00512 0.90017 1.16216 1.09791 0.93470 0.87585 1.26168 0.91797 0.91965 0.93088 1.81067 1.11644 1.12263 1.11059 1.20317 0.92624 0.92208 0.97035 1.18187 0.95691 0.95556 0.88960 1.21083 0.94847 1.32095 1.06074 0.92474 1.25772 1.02013 0.95083 0.96158 1.70058 1.37789 1.36045 1.12953 0.85744 0.80710 0.78177 0.78024 1.18011 1.21030 1.20458 0.91848 0.92590 0.92912 0.88654 0.93076 0.82100 0.81100 0.83299 0.95636 0.99721 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.89 71.98 0.71 -4.26 16 2 C -0.08 -2.32 5.56 29.85 0.17 -2.15 16 3 C -0.10 -3.14 5.13 -19.91 -0.10 -3.24 16 4 C -0.08 -1.71 9.67 22.33 0.22 -1.49 16 5 C -0.13 -2.52 10.03 22.23 0.22 -2.30 16 6 C -0.07 -1.83 9.76 22.54 0.22 -1.61 16 7 C -0.07 -2.50 5.73 -21.36 -0.12 -2.62 16 8 C 0.28 12.38 13.80 88.33 1.22 13.60 16 9 N -0.48 -23.12 18.54 19.00 0.35 -22.77 16 10 C -0.02 -0.78 5.10 -19.60 -0.10 -0.88 16 11 C 0.05 2.72 4.29 29.10 0.12 2.85 16 12 C -0.50 -27.63 6.95 25.60 0.18 -27.45 16 13 H 0.06 3.08 7.47 -2.91 -0.02 3.06 16 14 C 0.01 0.45 5.46 84.65 0.46 0.92 16 15 N -0.93 -56.29 13.29 21.44 0.28 -56.01 16 16 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.05 2.16 5.45 -2.38 -0.01 2.14 16 23 H 0.10 2.17 8.05 -2.38 -0.02 2.15 16 24 H 0.05 1.88 6.15 -2.39 -0.01 1.86 16 25 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 26 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 27 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.03 1.37 6.02 -2.38 -0.01 1.36 16 29 H -0.02 -0.91 7.09 -2.39 -0.02 -0.93 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -68.59 263.05 7.00 -61.59 By element: Atomic # 1 Polarization: -2.01 SS G_CDS: 1.14 Total: -0.86 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 3.20 Total: -28.65 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: 0.64 Total: -78.77 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.59 7.00 -61.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307264199.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.480 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds