Wall clock time and date at job start Mon Mar 30 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38254 * 120.00319 * 0.26336 * 4 3 2 6 6 C 1.38216 * 119.99725 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99769 * 180.02562 * 6 5 4 8 8 C 1.47200 * 109.47272 * 265.00128 * 7 6 5 9 9 N 5.17661 * 126.61384 * 216.10232 * 2 1 3 10 10 C 1.38208 * 120.00309 * 180.24160 * 2 1 3 11 11 C 1.50698 * 120.00211 * 359.97438 * 10 2 1 12 12 C 1.50694 * 109.47244 * 270.28489 * 11 10 2 13 13 H 1.07999 * 120.00284 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00179 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99910 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00305 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.46852 * 59.99897 * 16 14 12 18 18 H 1.48500 * 109.46884 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46907 * 299.99974 * 16 14 12 20 20 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 21 21 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 22 22 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 23 23 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.99941 * 180.27784 * 4 3 2 25 25 H 1.07997 * 120.00472 * 180.02562 * 5 4 3 26 26 H 1.08995 * 109.47098 * 25.00758 * 7 6 5 27 27 H 1.09005 * 109.46586 * 145.00133 * 7 6 5 28 28 H 1.09007 * 109.46985 * 30.28377 * 11 10 2 29 29 H 1.08998 * 109.47169 * 150.27763 * 11 10 2 30 30 H 0.97002 * 120.00164 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0062 6 6 3.5806 -1.1968 0.0012 7 6 4.3343 -2.5019 0.0022 8 6 4.4808 -2.9850 -1.3805 9 7 4.5944 -3.3572 -2.4483 10 6 2.1981 -1.1969 -0.0050 11 6 1.4447 -2.5020 -0.0100 12 6 1.1880 -2.9392 1.4091 13 1 1.5360 -2.3329 2.2323 14 6 0.5089 -4.1133 1.6567 15 7 0.0856 -4.8520 0.6542 16 14 0.1913 -4.6557 3.4158 17 1 -0.6132 -3.6217 4.1149 18 1 -0.5512 -5.9417 3.4108 19 1 1.4864 -4.8351 4.1199 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3634 0.8899 0.5139 23 1 1.6582 2.1327 0.0004 24 1 4.1203 2.1328 0.0104 25 1 5.3516 0.0002 0.0112 26 1 5.3206 -2.3516 0.4411 27 1 3.7844 -3.2385 0.5881 28 1 0.4943 -2.3709 -0.5273 29 1 2.0358 -3.2608 -0.5227 30 1 -0.3919 -5.6782 0.8283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307308041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:07 Heat of formation + Delta-G solvation = 12.789017 kcal Electronic energy + Delta-G solvation = -13670.830084 eV Core-core repulsion = 11429.517416 eV Total energy + Delta-G solvation = -2241.312668 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.59914 -37.57871 -35.48358 -34.34168 -33.38990 -30.09274 -28.23565 -27.51379 -25.04840 -21.93118 -21.36685 -18.53357 -18.27676 -16.91694 -16.84592 -16.32760 -15.66124 -14.83176 -14.74328 -14.38655 -14.12442 -13.85222 -13.71707 -13.38207 -13.20080 -12.94561 -12.79742 -12.59515 -12.48304 -12.20409 -12.12586 -11.58537 -11.48327 -11.09641 -10.52450 -9.40668 -9.20179 -8.12762 -6.25296 0.55269 0.73009 1.45915 1.46674 1.54681 1.82811 1.85275 2.44962 2.92045 3.18871 3.42767 4.01130 4.12688 4.27185 4.41919 4.58540 4.66027 4.71330 4.88835 4.89465 5.04026 5.16417 5.29699 5.33736 5.51647 5.58505 5.73892 5.77647 5.87795 6.15457 6.21128 6.36694 6.64041 6.88817 7.43556 8.95687 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.011090 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.498878 B = 2524.304106 C = 3155.735361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.118 4.118 4 C -0.136 4.136 5 C -0.109 4.109 6 C -0.107 4.107 7 C 0.016 3.984 8 C 0.243 3.757 9 N -0.500 5.500 10 C -0.061 4.061 11 C 0.058 3.942 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.008 3.992 15 N -0.932 5.932 16 Si 0.956 3.044 17 H -0.270 1.270 18 H -0.291 1.291 19 H -0.262 1.262 20 H 0.061 0.939 21 H 0.052 0.948 22 H 0.080 0.920 23 H 0.140 0.860 24 H 0.152 0.848 25 H 0.154 0.846 26 H 0.159 0.841 27 H 0.115 0.885 28 H -0.001 1.001 29 H 0.004 0.996 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.927 11.147 3.103 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.136 4.136 4 C -0.154 4.154 5 C -0.127 4.127 6 C -0.108 4.108 7 C -0.024 4.024 8 C -0.073 4.073 9 N -0.179 5.179 10 C -0.061 4.061 11 C 0.021 3.979 12 C -0.548 4.548 13 H 0.079 0.921 14 C -0.190 4.190 15 N -0.572 5.572 16 Si 0.781 3.219 17 H -0.195 1.195 18 H -0.216 1.216 19 H -0.186 1.186 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.099 0.901 23 H 0.158 0.842 24 H 0.170 0.830 25 H 0.171 0.829 26 H 0.176 0.824 27 H 0.133 0.867 28 H 0.017 0.983 29 H 0.022 0.978 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.011 10.419 1.464 12.644 hybrid contribution -0.833 -0.758 0.920 1.454 sum 6.178 9.661 2.384 11.713 Atomic orbital electron populations 1.20741 0.91689 1.02724 1.01572 1.19980 0.96558 0.93036 1.01567 1.21292 0.95158 0.97008 1.00152 1.21345 0.93854 0.98786 1.01384 1.21314 1.00968 0.91023 0.99414 1.19403 0.92496 0.94477 1.04472 1.18432 1.04521 0.95612 0.83797 1.29625 0.90890 0.91532 0.95233 1.81130 1.11683 1.11213 1.13837 1.20257 0.94079 0.95843 0.95907 1.18108 0.93769 0.89562 0.96466 1.21217 1.35527 1.05921 0.92105 0.92101 1.25842 0.95517 0.96767 1.00901 1.70099 1.39396 1.14761 1.32949 0.85626 0.78853 0.77216 0.80177 1.19522 1.21647 1.18624 0.92073 0.92857 0.90124 0.84223 0.83020 0.82863 0.82377 0.86729 0.98301 0.97814 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.92 9.19 71.24 0.65 -3.26 16 2 C -0.11 -4.06 5.88 -19.87 -0.12 -4.17 16 3 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 4 C -0.14 -3.34 10.05 22.27 0.22 -3.12 16 5 C -0.11 -2.84 9.68 22.27 0.22 -2.63 16 6 C -0.11 -3.58 5.09 -19.86 -0.10 -3.68 16 7 C 0.02 0.48 5.18 28.04 0.15 0.62 16 8 C 0.24 8.82 14.61 89.44 1.31 10.13 16 9 N -0.50 -20.63 18.54 20.01 0.37 -20.26 16 10 C -0.06 -2.48 5.07 -19.87 -0.10 -2.58 16 11 C 0.06 2.90 3.75 29.10 0.11 3.01 16 12 C -0.51 -26.76 8.26 25.60 0.21 -26.55 16 13 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 14 C 0.01 0.42 5.46 84.65 0.46 0.89 16 15 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 16 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 20 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.05 2.26 6.37 -2.39 -0.02 2.24 16 22 H 0.08 2.31 8.09 -2.39 -0.02 2.29 16 23 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 24 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 25 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 26 H 0.16 3.08 8.05 -2.39 -0.02 3.06 16 27 H 0.11 4.08 6.64 -2.38 -0.02 4.06 16 28 H 0.00 -0.07 6.72 -2.38 -0.02 -0.09 16 29 H 0.00 0.20 6.15 -2.39 -0.01 0.18 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -66.07 264.96 7.05 -59.02 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.14 Total: 5.93 kcal Atomic # 6 Polarization: -37.71 SS G_CDS: 3.23 Total: -34.49 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: 0.66 Total: -74.77 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -66.07 7.05 -59.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307308041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.811 kcal (2) G-P(sol) polarization free energy of solvation -66.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds