Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 H 1.09000 * 109.46901 * 304.99506 * 3 2 1 5 5 C 1.47196 * 109.47551 * 64.99560 * 3 2 1 6 6 N 3.43561 * 86.99557 * 40.50363 * 2 1 3 7 7 C 1.50705 * 109.46984 * 184.99859 * 3 2 1 8 8 C 1.37646 * 120.12697 * 294.63219 * 7 3 2 9 9 C 1.38613 * 120.24854 * 180.02562 * 8 7 3 10 10 C 1.38662 * 120.49916 * 359.97438 * 9 8 7 11 11 C 1.37601 * 120.24799 * 359.74094 * 10 9 8 12 12 C 1.40700 * 120.12814 * 114.60970 * 7 3 2 13 13 C 1.41397 * 120.24357 * 359.97438 * 12 7 3 14 14 H 1.07998 * 119.99864 * 331.78085 * 13 12 7 15 15 C 1.39940 * 119.99676 * 152.05784 * 13 12 7 16 16 N 1.30824 * 120.00358 * 346.62649 * 15 13 12 17 17 Si 1.86797 * 119.99901 * 166.62294 * 15 13 12 18 18 H 1.48505 * 109.47275 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47252 * 119.99851 * 17 15 13 20 20 H 1.48505 * 109.47437 * 239.99875 * 17 15 13 21 21 H 1.08999 * 109.47428 * 300.00184 * 1 2 3 22 22 H 1.08998 * 109.46987 * 60.00453 * 1 2 3 23 23 H 1.08994 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47488 * 239.99334 * 2 1 3 25 25 H 1.09007 * 109.46648 * 119.99012 * 2 1 3 26 26 H 1.07996 * 119.87193 * 359.97078 * 8 7 3 27 27 H 1.07998 * 119.74834 * 179.97438 * 9 8 7 28 28 H 1.08002 * 119.87207 * 179.97438 * 10 9 8 29 29 H 1.07997 * 120.12185 * 180.28503 * 11 10 9 30 30 H 0.97000 * 120.00013 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6505 2.1007 1.2577 6 7 1.3499 2.6087 2.2283 7 6 3.5419 1.4444 -0.1238 8 6 4.3187 0.9178 0.8831 9 6 5.7004 0.9186 0.7721 10 6 6.3158 1.4481 -0.3520 11 6 5.5588 1.9745 -1.3735 12 6 4.1554 1.9839 -1.2693 13 6 3.3676 2.5266 -2.3104 14 1 2.3675 2.1559 -2.4802 15 6 3.8858 3.5401 -3.1244 16 7 4.9791 4.1668 -2.7729 17 14 3.0166 3.9981 -4.7132 18 1 1.8117 3.1465 -4.8816 19 1 2.6109 5.4258 -4.6617 20 1 3.9363 3.7859 -5.8596 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.8500 0.5032 1.7633 27 1 6.3022 0.5038 1.5672 28 1 7.3931 1.4439 -0.4278 29 1 6.0401 2.3822 -2.2501 30 1 5.3380 4.8695 -3.3370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307314434.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 23.316821 kcal Electronic energy + Delta-G solvation = -13710.001160 eV Core-core repulsion = 11469.145012 eV Total energy + Delta-G solvation = -2240.856148 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.37639 -36.12658 -33.89766 -33.69119 -30.34748 -29.51473 -26.53202 -25.03943 -21.96227 -21.08957 -20.16893 -17.37396 -16.55981 -15.65759 -14.78254 -14.31162 -14.03646 -13.49529 -13.02378 -12.78092 -12.62368 -12.30417 -12.05552 -11.66731 -11.51164 -11.26267 -11.17797 -11.08021 -10.82957 -10.53631 -10.50806 -10.28960 -9.54302 -9.33283 -9.28771 -7.48346 -7.43287 -6.81071 -4.47896 2.66946 2.84420 3.04736 3.08402 3.16073 3.47037 3.52426 3.87719 4.55476 4.77116 5.32210 5.48788 5.55845 5.67267 6.03887 6.12703 6.17099 6.22806 6.29079 6.39370 6.50275 6.64401 6.69433 7.03511 7.15333 7.27076 7.49200 7.77553 7.91082 7.99872 8.17594 8.26430 8.52106 8.78447 8.85466 10.13503 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.012093 C = 0.009108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.896515 B = 2314.845211 C = 3073.473066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.061 3.939 4 H 0.123 0.877 5 C 0.237 3.763 6 N -0.476 5.476 7 C -0.199 4.199 8 C -0.079 4.079 9 C -0.236 4.236 10 C -0.103 4.103 11 C -0.155 4.155 12 C 0.126 3.874 13 C -0.466 4.466 14 H 0.084 0.916 15 C 0.076 3.924 16 N -0.795 5.795 17 Si 0.906 3.094 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.272 1.272 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -5.067 -1.673 6.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C 0.040 3.960 4 H 0.141 0.859 5 C -0.079 4.079 6 N -0.153 5.153 7 C -0.202 4.202 8 C -0.098 4.098 9 C -0.256 4.256 10 C -0.122 4.122 11 C -0.175 4.175 12 C 0.124 3.876 13 C -0.496 4.496 14 H 0.102 0.898 15 C -0.141 4.141 16 N -0.420 5.420 17 Si 0.731 3.269 18 H -0.182 1.182 19 H -0.200 1.200 20 H -0.197 1.197 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.704 -4.094 -0.282 5.528 hybrid contribution -0.016 0.238 -1.002 1.030 sum -3.720 -3.856 -1.285 5.510 Atomic orbital electron populations 1.21875 0.96320 1.01392 1.01806 1.21566 0.94867 0.94958 1.03242 1.17759 0.95371 0.94560 0.88349 0.85936 1.29586 0.91311 0.92527 0.94494 1.81048 1.11198 1.10551 1.12501 1.19123 0.90682 1.13166 0.97203 1.20341 0.93740 0.98994 0.96681 1.20368 0.93982 1.11338 0.99888 1.20747 0.97592 0.99004 0.94850 1.21337 0.94002 1.03009 0.99124 1.17385 0.92132 0.87903 0.90195 1.19594 1.01225 1.16798 1.11943 0.89817 1.25888 0.94575 0.95070 0.98610 1.69803 1.18902 1.17655 1.35651 0.86286 0.80383 0.78968 0.81299 1.18223 1.20027 1.19741 0.93342 0.92245 0.92744 0.89876 0.91905 0.89578 0.89432 0.89326 0.86249 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.72 37.16 0.36 -1.67 16 2 C -0.11 -1.63 5.19 -26.73 -0.14 -1.77 16 3 C 0.06 1.13 2.26 -94.56 -0.21 0.92 16 4 H 0.12 2.28 5.81 -51.93 -0.30 1.98 16 5 C 0.24 4.74 13.00 -20.76 -0.27 4.47 16 6 N -0.48 -10.18 18.54 42.15 0.78 -9.40 16 7 C -0.20 -4.36 4.82 -103.91 -0.50 -4.86 16 8 C -0.08 -1.70 8.86 -39.66 -0.35 -2.05 16 9 C -0.24 -5.12 10.05 -39.29 -0.39 -5.52 16 10 C -0.10 -2.33 10.02 -39.66 -0.40 -2.72 16 11 C -0.16 -3.80 8.66 -38.87 -0.34 -4.14 16 12 C 0.13 3.07 5.55 -106.83 -0.59 2.47 16 13 C -0.47 -11.09 8.20 -37.74 -0.31 -11.40 16 14 H 0.08 1.84 6.45 -52.49 -0.34 1.50 16 15 C 0.08 1.79 5.21 -17.34 -0.09 1.70 16 16 N -0.79 -19.58 10.95 55.55 0.61 -18.97 16 17 Si 0.91 17.54 29.58 -169.99 -5.03 12.51 16 18 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H 0.05 0.66 7.38 -51.93 -0.38 0.28 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 26 H 0.09 1.70 7.80 -52.49 -0.41 1.29 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.12 3.02 6.28 -52.49 -0.33 2.69 16 30 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 LS Contribution 262.37 15.07 3.95 3.95 Total: -1.00 -26.21 262.37 -6.34 -32.55 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.42 Total: 3.93 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -3.23 Total: -24.57 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 1.39 Total: -28.37 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.21 -6.34 -32.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307314434.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.863 kcal (2) G-P(sol) polarization free energy of solvation -26.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds