Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 H 1.09000 * 109.46901 * 304.99506 * 3 2 1 5 5 C 1.47196 * 109.47551 * 64.99560 * 3 2 1 6 6 N 3.43561 * 86.99557 * 40.50363 * 2 1 3 7 7 C 1.50705 * 109.46984 * 184.99859 * 3 2 1 8 8 C 1.37646 * 120.12697 * 294.63219 * 7 3 2 9 9 C 1.38613 * 120.24854 * 180.02562 * 8 7 3 10 10 C 1.38662 * 120.49916 * 359.97438 * 9 8 7 11 11 C 1.37601 * 120.24799 * 359.74094 * 10 9 8 12 12 C 1.40700 * 120.12814 * 114.60970 * 7 3 2 13 13 C 1.41397 * 120.24357 * 359.97438 * 12 7 3 14 14 H 1.07998 * 119.99864 * 331.78085 * 13 12 7 15 15 C 1.39940 * 119.99676 * 152.05784 * 13 12 7 16 16 N 1.30824 * 120.00358 * 346.62649 * 15 13 12 17 17 Si 1.86797 * 119.99901 * 166.62294 * 15 13 12 18 18 H 1.48505 * 109.47275 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47252 * 119.99851 * 17 15 13 20 20 H 1.48505 * 109.47437 * 239.99875 * 17 15 13 21 21 H 1.08999 * 109.47428 * 300.00184 * 1 2 3 22 22 H 1.08998 * 109.46987 * 60.00453 * 1 2 3 23 23 H 1.08994 * 109.46932 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47488 * 239.99334 * 2 1 3 25 25 H 1.09007 * 109.46648 * 119.99012 * 2 1 3 26 26 H 1.07996 * 119.87193 * 359.97078 * 8 7 3 27 27 H 1.07998 * 119.74834 * 179.97438 * 9 8 7 28 28 H 1.08002 * 119.87207 * 179.97438 * 10 9 8 29 29 H 1.07997 * 120.12185 * 180.28503 * 11 10 9 30 30 H 0.97000 * 120.00013 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6505 2.1007 1.2577 6 7 1.3499 2.6087 2.2283 7 6 3.5419 1.4444 -0.1238 8 6 4.3187 0.9178 0.8831 9 6 5.7004 0.9186 0.7721 10 6 6.3158 1.4481 -0.3520 11 6 5.5588 1.9745 -1.3735 12 6 4.1554 1.9839 -1.2693 13 6 3.3676 2.5266 -2.3104 14 1 2.3675 2.1559 -2.4802 15 6 3.8858 3.5401 -3.1244 16 7 4.9791 4.1668 -2.7729 17 14 3.0166 3.9981 -4.7132 18 1 1.8117 3.1465 -4.8816 19 1 2.6109 5.4258 -4.6617 20 1 3.9363 3.7859 -5.8596 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5137 0.8901 26 1 3.8500 0.5032 1.7633 27 1 6.3022 0.5038 1.5672 28 1 7.3931 1.4439 -0.4278 29 1 6.0401 2.3822 -2.2501 30 1 5.3380 4.8695 -3.3370 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307314434.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = 11.533261 kcal Electronic energy + Delta-G solvation = -13710.512133 eV Core-core repulsion = 11469.145012 eV Total energy + Delta-G solvation = -2241.367121 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03695 -37.75302 -35.48875 -35.31692 -31.90254 -31.22173 -28.07994 -26.75521 -23.27836 -22.75967 -21.88213 -19.13052 -18.10520 -17.36913 -16.37528 -15.74546 -15.67239 -14.92003 -14.61325 -14.40154 -14.30832 -13.79906 -13.44196 -13.34495 -12.95691 -12.85706 -12.72723 -12.70430 -12.29267 -12.04283 -11.85690 -11.69837 -11.20481 -11.03135 -11.00217 -9.22836 -9.22139 -8.55100 -6.28935 0.95955 1.10946 1.46731 1.57006 1.59984 1.87081 1.90903 2.26508 2.81608 3.20780 3.77098 4.12126 4.27976 4.36095 4.50586 4.62740 4.70265 4.83529 4.99719 5.03444 5.20059 5.26913 5.35017 5.38453 5.49851 5.53606 5.74940 6.03142 6.14782 6.22101 6.40718 6.65681 6.75565 6.99614 7.08646 8.41928 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.012093 C = 0.009108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.896515 B = 2314.845211 C = 3073.473066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 C 0.064 3.936 4 H 0.123 0.877 5 C 0.249 3.751 6 N -0.501 5.501 7 C -0.198 4.198 8 C -0.087 4.087 9 C -0.239 4.239 10 C -0.111 4.111 11 C -0.183 4.183 12 C 0.098 3.902 13 C -0.487 4.487 14 H 0.097 0.903 15 C 0.034 3.966 16 N -0.833 5.833 17 Si 0.974 3.026 18 H -0.246 1.246 19 H -0.276 1.276 20 H -0.271 1.271 21 H 0.039 0.961 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 -6.018 -1.787 7.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.140 4.140 3 C 0.043 3.957 4 H 0.141 0.859 5 C -0.067 4.067 6 N -0.179 5.179 7 C -0.201 4.201 8 C -0.105 4.105 9 C -0.259 4.259 10 C -0.129 4.129 11 C -0.202 4.202 12 C 0.096 3.904 13 C -0.517 4.517 14 H 0.115 0.885 15 C -0.180 4.180 16 N -0.460 5.460 17 Si 0.796 3.204 18 H -0.169 1.169 19 H -0.202 1.202 20 H -0.196 1.196 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.123 0.877 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.869 -5.060 -0.385 7.033 hybrid contribution 0.403 0.499 -0.879 1.088 sum -4.466 -4.562 -1.264 6.508 Atomic orbital electron populations 1.21842 0.94398 1.02960 1.01714 1.21540 0.96466 0.92209 1.03749 1.17866 0.93433 0.96820 0.87612 0.85925 1.29796 0.90657 0.91845 0.94373 1.81059 1.11982 1.11432 1.13382 1.19414 0.92539 1.11700 0.96401 1.20629 0.93918 0.98768 0.97183 1.20717 0.94543 1.10552 1.00044 1.20990 0.98620 0.98604 0.94713 1.21344 0.94714 1.04691 0.99497 1.17730 0.92381 0.88838 0.91490 1.19914 1.01945 1.17247 1.12555 0.88531 1.26717 0.95092 0.94780 1.01407 1.69885 1.20543 1.18505 1.37034 0.85257 0.79544 0.78489 0.77127 1.16909 1.20154 1.19591 0.94218 0.91561 0.90385 0.89280 0.91488 0.87682 0.86937 0.87536 0.88082 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.72 71.98 0.70 -2.79 16 2 C -0.10 -2.81 5.19 30.59 0.16 -2.65 16 3 C 0.06 2.28 2.26 -13.34 -0.03 2.25 16 4 H 0.12 4.41 5.81 -2.39 -0.01 4.40 16 5 C 0.25 9.61 13.00 89.44 1.16 10.77 16 6 N -0.50 -20.83 18.54 20.01 0.37 -20.46 16 7 C -0.20 -8.49 4.82 -19.40 -0.09 -8.58 16 8 C -0.09 -3.59 8.86 22.22 0.20 -3.39 16 9 C -0.24 -10.00 10.05 22.46 0.23 -9.78 16 10 C -0.11 -4.96 10.02 22.22 0.22 -4.74 16 11 C -0.18 -9.11 8.66 22.73 0.20 -8.92 16 12 C 0.10 4.78 5.55 -21.29 -0.12 4.66 16 13 C -0.49 -23.18 8.20 23.46 0.19 -22.99 16 14 H 0.10 4.17 6.45 -2.91 -0.02 4.15 16 15 C 0.03 1.61 5.21 85.26 0.44 2.05 16 16 N -0.83 -41.95 10.95 21.83 0.24 -41.71 16 17 Si 0.97 35.68 29.58 68.60 2.03 37.71 16 18 H -0.25 -8.42 7.11 99.48 0.71 -7.72 16 19 H -0.28 -10.08 7.11 99.48 0.71 -9.38 16 20 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 21 H 0.04 0.98 7.38 -2.39 -0.02 0.96 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.07 1.81 7.91 -2.38 -0.02 1.79 16 26 H 0.11 3.90 7.80 -2.91 -0.02 3.88 16 27 H 0.11 4.08 8.06 -2.91 -0.02 4.05 16 28 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 29 H 0.10 5.32 6.28 -2.91 -0.02 5.30 16 30 H 0.28 13.12 8.30 -92.71 -0.77 12.35 16 Total: -1.00 -55.44 262.37 7.03 -48.41 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.14 Total: 20.16 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 3.26 Total: -44.11 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.61 Total: -62.17 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Total: -55.44 7.03 -48.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307314434.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.941 kcal (2) G-P(sol) polarization free energy of solvation -55.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds