Wall clock time and date at job start Mon Mar 30 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46629 * 2 1 4 4 H 1.09004 * 109.47271 * 55.00066 * 3 2 1 5 5 C 1.47200 * 109.47160 * 294.99939 * 3 2 1 6 6 N 3.43554 * 86.99352 * 319.49238 * 2 1 3 7 7 C 1.50702 * 109.47193 * 175.00080 * 3 2 1 8 8 C 1.37644 * 120.12545 * 54.62106 * 7 3 2 9 9 C 1.38614 * 120.24634 * 179.70415 * 8 7 3 10 10 C 1.38663 * 120.49993 * 0.59664 * 9 8 7 11 11 C 1.37596 * 120.24551 * 359.67989 * 10 9 8 12 12 C 1.40696 * 120.12699 * 234.89735 * 7 3 2 13 13 C 1.41390 * 120.24690 * 0.02562 * 12 7 3 14 14 H 1.08006 * 119.99923 * 328.58091 * 13 12 7 15 15 C 1.39944 * 120.00295 * 148.57718 * 13 12 7 16 16 N 1.30829 * 119.99918 * 348.55925 * 15 13 12 17 17 Si 1.86802 * 120.00149 * 168.55402 * 15 13 12 18 18 H 1.48496 * 109.46918 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46785 * 120.00374 * 17 15 13 20 20 H 1.48503 * 109.47080 * 240.00551 * 17 15 13 21 21 H 1.08999 * 109.47519 * 60.00314 * 1 2 3 22 22 H 1.09001 * 109.47394 * 299.99265 * 1 2 3 23 23 H 1.09011 * 109.46864 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47519 * 119.99686 * 2 1 3 25 25 H 1.08996 * 109.47515 * 240.00253 * 2 1 3 26 26 H 1.08005 * 119.87426 * 359.97438 * 8 7 3 27 27 H 1.07994 * 119.74888 * 180.30106 * 9 8 7 28 28 H 1.08000 * 119.87384 * 179.70335 * 10 9 8 29 29 H 1.08007 * 120.12397 * 180.02562 * 11 10 9 30 30 H 0.96997 * 120.00222 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6504 2.1007 -1.2578 6 7 1.3498 2.6085 -2.2285 7 6 3.5418 1.4445 0.1238 8 6 4.3093 0.7282 -0.7664 9 6 5.6912 0.7332 -0.6586 10 6 6.3157 1.4480 0.3523 11 6 5.5681 2.1666 1.2567 12 6 4.1646 2.1738 1.1533 13 6 3.3861 2.9081 2.0774 14 1 2.4468 3.3421 1.7675 15 6 3.8326 3.0727 3.3934 16 7 4.8451 2.3706 3.8333 17 14 2.9830 4.2950 4.5220 18 1 1.8741 4.9573 3.7893 19 1 2.4377 3.5808 5.7042 20 1 3.9617 5.3183 4.9698 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8331 0.1637 -1.5545 27 1 6.2858 0.1723 -1.3643 28 1 7.3929 1.4409 0.4298 29 1 6.0565 2.7230 2.0431 30 1 5.1548 2.4849 4.7454 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307314435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:34 Heat of formation + Delta-G solvation = 23.060072 kcal Electronic energy + Delta-G solvation = -13711.897939 eV Core-core repulsion = 11471.030658 eV Total energy + Delta-G solvation = -2240.867281 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.38326 -36.13844 -33.91413 -33.65611 -30.36027 -29.50792 -26.52697 -25.03895 -22.06807 -20.94268 -20.19013 -17.34822 -16.58164 -15.64837 -14.82499 -14.30001 -14.03998 -13.51319 -12.99743 -12.74792 -12.62179 -12.36914 -12.06533 -11.63815 -11.49399 -11.40468 -11.17816 -10.95397 -10.74357 -10.58928 -10.49689 -10.31815 -9.50077 -9.36265 -9.28163 -7.49973 -7.41186 -6.79681 -4.48549 2.66416 2.82922 3.05613 3.10004 3.15472 3.44496 3.50394 3.89362 4.56903 4.77312 5.30936 5.50919 5.56409 5.67876 6.02894 6.12939 6.17980 6.22676 6.31078 6.37721 6.52927 6.66456 6.69843 7.04287 7.13312 7.25716 7.48981 7.76196 7.91035 7.98003 8.17046 8.24301 8.51418 8.79264 8.84702 10.15827 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.012125 C = 0.009152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.842297 B = 2308.656776 C = 3058.649166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C 0.060 3.940 4 H 0.124 0.876 5 C 0.235 3.765 6 N -0.477 5.477 7 C -0.196 4.196 8 C -0.080 4.080 9 C -0.234 4.234 10 C -0.104 4.104 11 C -0.151 4.151 12 C 0.127 3.873 13 C -0.469 4.469 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.798 5.798 17 Si 0.905 3.095 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.273 1.273 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.196 -2.866 0.176 4.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.145 4.145 3 C 0.039 3.961 4 H 0.141 0.859 5 C -0.081 4.081 6 N -0.154 5.154 7 C -0.199 4.199 8 C -0.098 4.098 9 C -0.253 4.253 10 C -0.123 4.123 11 C -0.170 4.170 12 C 0.125 3.875 13 C -0.498 4.498 14 H 0.099 0.901 15 C -0.139 4.139 16 N -0.424 5.424 17 Si 0.730 3.270 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.198 1.198 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.135 0.865 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.527 -2.134 -1.071 4.259 hybrid contribution -0.031 0.301 0.980 1.025 sum -3.558 -1.833 -0.091 4.003 Atomic orbital electron populations 1.21874 0.96319 1.01401 1.01767 1.21545 0.94866 0.94825 1.03268 1.17739 0.95337 0.94757 0.88253 0.85853 1.29712 0.91280 0.92531 0.94626 1.81047 1.11249 1.10585 1.12497 1.19202 0.90600 1.06611 1.03471 1.20369 0.93731 0.98374 0.97374 1.20390 0.94031 1.08404 1.02481 1.20752 0.97652 0.98164 0.95732 1.21295 0.93842 1.02378 0.99508 1.17406 0.91950 0.88433 0.89747 1.19544 1.06103 1.30006 0.94187 0.90115 1.25836 0.94404 0.94685 0.98984 1.69789 1.22185 1.32941 1.17440 0.86301 0.80198 0.80690 0.79847 1.18381 1.19917 1.19809 0.93402 0.92202 0.92742 0.89734 0.91960 0.89346 0.89349 0.89271 0.86509 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.72 37.16 0.36 -1.70 16 2 C -0.11 -1.65 5.04 -26.73 -0.13 -1.78 16 3 C 0.06 1.12 2.27 -94.56 -0.21 0.91 16 4 H 0.12 2.31 5.86 -51.93 -0.30 2.00 16 5 C 0.23 4.61 13.35 -20.76 -0.28 4.34 16 6 N -0.48 -10.01 18.54 42.15 0.78 -9.23 16 7 C -0.20 -4.29 4.82 -103.91 -0.50 -4.79 16 8 C -0.08 -1.70 8.92 -39.66 -0.35 -2.05 16 9 C -0.23 -5.01 10.05 -39.29 -0.39 -5.40 16 10 C -0.10 -2.34 10.02 -39.66 -0.40 -2.74 16 11 C -0.15 -3.69 8.64 -38.87 -0.34 -4.03 16 12 C 0.13 3.10 5.51 -106.83 -0.59 2.51 16 13 C -0.47 -11.28 8.10 -37.74 -0.31 -11.58 16 14 H 0.08 1.86 6.58 -52.48 -0.35 1.51 16 15 C 0.08 1.83 5.22 -17.34 -0.09 1.74 16 16 N -0.80 -19.37 11.07 55.55 0.61 -18.75 16 17 Si 0.91 17.67 29.58 -169.99 -5.03 12.65 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H 0.05 0.66 7.38 -51.93 -0.38 0.27 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 26 H 0.09 1.69 7.33 -52.48 -0.38 1.31 16 27 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.12 2.96 6.46 -52.48 -0.34 2.62 16 30 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 261.91 15.07 3.95 3.95 Total: -1.00 -25.92 261.91 -6.30 -32.22 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -3.38 Total: 3.74 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.23 Total: -24.58 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: 1.40 Total: -27.98 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -25.92 -6.30 -32.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307314435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.284 kcal (2) G-P(sol) polarization free energy of solvation -25.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds