Wall clock time and date at job start Mon Mar 30 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46629 * 2 1 4 4 H 1.09004 * 109.47271 * 55.00066 * 3 2 1 5 5 C 1.47200 * 109.47160 * 294.99939 * 3 2 1 6 6 N 3.43554 * 86.99352 * 319.49238 * 2 1 3 7 7 C 1.50702 * 109.47193 * 175.00080 * 3 2 1 8 8 C 1.37644 * 120.12545 * 54.62106 * 7 3 2 9 9 C 1.38614 * 120.24634 * 179.70415 * 8 7 3 10 10 C 1.38663 * 120.49993 * 0.59664 * 9 8 7 11 11 C 1.37596 * 120.24551 * 359.67989 * 10 9 8 12 12 C 1.40696 * 120.12699 * 234.89735 * 7 3 2 13 13 C 1.41390 * 120.24690 * 0.02562 * 12 7 3 14 14 H 1.08006 * 119.99923 * 328.58091 * 13 12 7 15 15 C 1.39944 * 120.00295 * 148.57718 * 13 12 7 16 16 N 1.30829 * 119.99918 * 348.55925 * 15 13 12 17 17 Si 1.86802 * 120.00149 * 168.55402 * 15 13 12 18 18 H 1.48496 * 109.46918 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46785 * 120.00374 * 17 15 13 20 20 H 1.48503 * 109.47080 * 240.00551 * 17 15 13 21 21 H 1.08999 * 109.47519 * 60.00314 * 1 2 3 22 22 H 1.09001 * 109.47394 * 299.99265 * 1 2 3 23 23 H 1.09011 * 109.46864 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47519 * 119.99686 * 2 1 3 25 25 H 1.08996 * 109.47515 * 240.00253 * 2 1 3 26 26 H 1.08005 * 119.87426 * 359.97438 * 8 7 3 27 27 H 1.07994 * 119.74888 * 180.30106 * 9 8 7 28 28 H 1.08000 * 119.87384 * 179.70335 * 10 9 8 29 29 H 1.08007 * 120.12397 * 180.02562 * 11 10 9 30 30 H 0.96997 * 120.00222 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6504 2.1007 -1.2578 6 7 1.3498 2.6085 -2.2285 7 6 3.5418 1.4445 0.1238 8 6 4.3093 0.7282 -0.7664 9 6 5.6912 0.7332 -0.6586 10 6 6.3157 1.4480 0.3523 11 6 5.5681 2.1666 1.2567 12 6 4.1646 2.1738 1.1533 13 6 3.3861 2.9081 2.0774 14 1 2.4468 3.3421 1.7675 15 6 3.8326 3.0727 3.3934 16 7 4.8451 2.3706 3.8333 17 14 2.9830 4.2950 4.5220 18 1 1.8741 4.9573 3.7893 19 1 2.4377 3.5808 5.7042 20 1 3.9617 5.3183 4.9698 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.8331 0.1637 -1.5545 27 1 6.2858 0.1723 -1.3643 28 1 7.3929 1.4409 0.4298 29 1 6.0565 2.7230 2.0431 30 1 5.1548 2.4849 4.7454 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307314435.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:33 Heat of formation + Delta-G solvation = 11.579632 kcal Electronic energy + Delta-G solvation = -13712.395769 eV Core-core repulsion = 11471.030658 eV Total energy + Delta-G solvation = -2241.365111 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03909 -37.75207 -35.49480 -35.29477 -31.92760 -31.20047 -28.07577 -26.76191 -23.43751 -22.57412 -21.89599 -19.11032 -18.11642 -17.35705 -16.42024 -15.75984 -15.67330 -14.94370 -14.59761 -14.35285 -14.29863 -13.87127 -13.44361 -13.32044 -13.06882 -12.85011 -12.76610 -12.47300 -12.38072 -12.05123 -11.93331 -11.70213 -11.14128 -11.06204 -10.99734 -9.23845 -9.19432 -8.53797 -6.30403 0.95430 1.10472 1.45784 1.55318 1.57879 1.86924 1.90762 2.26500 2.82730 3.20705 3.74424 4.12886 4.26910 4.33987 4.52474 4.62729 4.70958 4.83203 4.99128 5.01836 5.19373 5.26638 5.34094 5.38193 5.48741 5.52891 5.74952 6.02513 6.14267 6.20800 6.40784 6.65506 6.74245 7.00217 7.07435 8.43869 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.012125 C = 0.009152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.842297 B = 2308.656776 C = 3058.649166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C 0.064 3.936 4 H 0.122 0.878 5 C 0.248 3.752 6 N -0.499 5.499 7 C -0.197 4.197 8 C -0.086 4.086 9 C -0.235 4.235 10 C -0.112 4.112 11 C -0.179 4.179 12 C 0.097 3.903 13 C -0.492 4.492 14 H 0.084 0.916 15 C 0.041 3.959 16 N -0.830 5.830 17 Si 0.970 3.030 18 H -0.257 1.257 19 H -0.267 1.267 20 H -0.273 1.273 21 H 0.041 0.959 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 -3.507 -0.128 5.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.139 4.139 3 C 0.043 3.957 4 H 0.139 0.861 5 C -0.068 4.068 6 N -0.177 5.177 7 C -0.199 4.199 8 C -0.104 4.104 9 C -0.254 4.254 10 C -0.130 4.130 11 C -0.199 4.199 12 C 0.095 3.905 13 C -0.522 4.522 14 H 0.102 0.898 15 C -0.174 4.174 16 N -0.457 5.457 17 Si 0.793 3.207 18 H -0.181 1.181 19 H -0.191 1.191 20 H -0.198 1.198 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.088 0.912 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.465 -2.785 -1.387 5.442 hybrid contribution 0.321 0.446 0.997 1.139 sum -4.145 -2.339 -0.389 4.775 Atomic orbital electron populations 1.21837 0.94359 1.02949 1.01713 1.21522 0.96531 0.92315 1.03573 1.17799 0.93474 0.96829 0.87626 0.86061 1.29806 0.90664 0.91878 0.94402 1.81060 1.11959 1.11368 1.13272 1.19504 0.92416 1.05496 1.02506 1.20698 0.93895 0.98173 0.97656 1.20765 0.94603 1.07763 1.02298 1.21006 0.98718 0.97759 0.95509 1.21284 0.94448 1.03888 1.00244 1.17748 0.92232 0.89470 0.91028 1.19755 1.06562 1.30975 0.94880 0.89818 1.26564 0.94880 0.95840 1.00072 1.69853 1.23502 1.34234 1.18084 0.85314 0.79056 0.78365 0.78011 1.18094 1.19135 1.19831 0.93995 0.91718 0.90434 0.89793 0.91250 0.86946 0.86625 0.87411 0.88457 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.72 71.98 0.70 -2.90 16 2 C -0.10 -2.90 5.04 30.60 0.15 -2.74 16 3 C 0.06 2.30 2.27 -13.34 -0.03 2.27 16 4 H 0.12 4.45 5.86 -2.38 -0.01 4.44 16 5 C 0.25 9.41 13.35 89.44 1.19 10.60 16 6 N -0.50 -20.30 18.54 20.01 0.37 -19.92 16 7 C -0.20 -8.43 4.82 -19.40 -0.09 -8.53 16 8 C -0.09 -3.49 8.92 22.22 0.20 -3.29 16 9 C -0.24 -9.64 10.05 22.46 0.23 -9.41 16 10 C -0.11 -4.94 10.02 22.22 0.22 -4.72 16 11 C -0.18 -8.94 8.64 22.73 0.20 -8.74 16 12 C 0.10 4.80 5.51 -21.29 -0.12 4.68 16 13 C -0.49 -23.94 8.10 23.46 0.19 -23.75 16 14 H 0.08 3.87 6.58 -2.91 -0.02 3.85 16 15 C 0.04 1.92 5.22 85.26 0.45 2.37 16 16 N -0.83 -41.06 11.07 21.83 0.24 -40.82 16 17 Si 0.97 36.21 29.58 68.60 2.03 38.24 16 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H 0.04 1.05 7.38 -2.39 -0.02 1.03 16 22 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.07 1.89 7.30 -2.39 -0.02 1.88 16 26 H 0.11 3.97 7.33 -2.91 -0.02 3.95 16 27 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 28 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 29 H 0.10 5.13 6.46 -2.91 -0.02 5.11 16 30 H 0.29 12.88 8.30 -92.71 -0.77 12.11 16 Total: -1.00 -54.68 261.91 7.06 -47.61 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.14 Total: 19.05 kcal Atomic # 6 Polarization: -47.44 SS G_CDS: 3.29 Total: -44.16 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.61 Total: -60.74 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -54.68 7.06 -47.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307314435.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.192 kcal (2) G-P(sol) polarization free energy of solvation -54.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds