Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.44849 * 2 1 4 4 C 1.53050 * 109.45987 * 240.04127 * 2 1 3 5 5 C 1.53191 * 109.31253 * 178.61203 * 4 2 1 6 6 N 1.46929 * 108.77677 * 54.63119 * 5 4 2 7 7 C 1.34768 * 120.62614 * 126.36834 * 6 5 4 8 8 O 1.21694 * 120.00005 * 174.75993 * 7 6 5 9 9 C 1.46377 * 120.00613 * 354.75918 * 7 6 5 10 10 H 1.08006 * 119.99552 * 5.67725 * 9 7 6 11 11 C 1.40049 * 120.00471 * 185.67470 * 9 7 6 12 12 N 1.30673 * 119.99861 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 119.99947 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47116 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47100 * 120.00063 * 13 11 9 16 16 H 1.48499 * 109.47039 * 240.00136 * 13 11 9 17 17 C 1.46920 * 118.73954 * 306.39483 * 6 5 4 18 18 C 1.53032 * 109.46517 * 119.97100 * 2 1 3 19 19 H 1.08999 * 109.49609 * 61.43293 * 18 2 1 20 20 F 1.39903 * 109.49595 * 301.33723 * 18 2 1 21 21 H 1.09002 * 109.47180 * 300.02693 * 1 2 3 22 22 H 1.08994 * 109.47372 * 60.03226 * 1 2 3 23 23 H 1.09004 * 109.46608 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.49424 * 298.56275 * 4 2 1 25 25 H 1.08998 * 109.49607 * 58.65799 * 4 2 1 26 26 H 1.08996 * 109.58661 * 174.42131 * 5 4 2 27 27 H 1.09002 * 109.58519 * 294.70133 * 5 4 2 28 28 H 0.96999 * 120.00323 * 179.97438 * 12 11 9 29 29 H 1.08999 * 109.58690 * 293.81980 * 17 6 5 30 30 H 1.09005 * 109.58849 * 173.39604 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7206 -1.2503 5 6 3.5714 -0.6884 -1.2644 6 7 4.0680 -1.2487 -0.0002 7 6 4.9615 -2.2576 -0.0004 8 8 5.4372 -2.6492 1.0490 9 6 5.3598 -2.8824 -1.2628 10 1 5.0094 -2.4766 -2.2003 11 6 6.1954 -4.0063 -1.2549 12 7 6.6190 -4.4976 -0.1205 13 14 6.7042 -4.8031 -2.8660 14 1 6.0952 -4.0613 -3.9991 15 1 8.1836 -4.7680 -2.9900 16 1 6.2387 -6.2131 -2.8895 17 6 3.5715 -0.6886 1.2640 18 6 2.0399 -0.7208 1.2499 19 1 1.6979 -1.7557 1.2381 20 9 1.5489 -0.0791 2.3920 21 1 -0.3634 0.5143 0.8898 22 1 -0.3634 0.5133 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6978 -1.7555 -1.2385 25 1 1.6571 -0.2205 -2.1399 26 1 3.9417 -1.2842 -2.0986 27 1 3.9142 0.3409 -1.3701 28 1 7.1974 -5.2762 -0.1150 29 1 3.9143 0.3409 1.3672 30 1 3.9418 -1.2846 2.0982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307358940.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -99.599901 kcal Electronic energy + Delta-G solvation = -14928.587116 eV Core-core repulsion = 12251.631674 eV Total energy + Delta-G solvation = -2676.955442 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.29522 -38.51434 -36.01371 -32.93512 -32.42358 -30.16695 -27.85543 -26.04696 -22.81343 -22.52735 -20.45032 -19.07725 -16.77864 -15.75973 -15.58037 -15.15318 -14.97853 -14.38333 -14.20200 -13.53055 -12.91440 -12.68660 -12.58345 -12.35298 -11.90349 -11.76861 -11.36690 -11.13715 -11.00663 -10.83298 -10.65376 -10.40573 -10.24893 -9.92791 -9.80739 -8.91764 -7.66588 -7.34455 -6.26032 -4.71172 3.09162 3.17489 3.21392 4.01744 4.39713 4.47796 4.74068 4.93508 4.99301 5.20833 5.44104 5.60633 5.67208 5.77249 5.82974 5.86664 5.95224 6.14321 6.21189 6.32123 6.35237 6.45018 6.49708 6.71656 7.40433 7.51410 8.05228 8.26108 8.96150 9.34001 10.50305 10.68784 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.046394 B = 0.008738 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.384812 B = 3203.624335 C = 3615.872469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.117 3.883 6 N -0.640 5.640 7 C 0.558 3.442 8 O -0.576 6.576 9 C -0.543 4.543 10 H 0.075 0.925 11 C 0.087 3.913 12 N -0.767 5.767 13 Si 0.908 3.092 14 H -0.263 1.263 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.100 3.900 18 C 0.080 3.920 19 H 0.082 0.918 20 F -0.218 7.218 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.269 0.731 29 H 0.052 0.948 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 6.497 -3.709 11.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 H 0.095 0.905 4 C -0.166 4.166 5 C -0.007 4.007 6 N -0.378 5.378 7 C 0.365 3.635 8 O -0.458 6.458 9 C -0.579 4.579 10 H 0.093 0.907 11 C -0.133 4.133 12 N -0.395 5.395 13 Si 0.732 3.268 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.025 4.025 18 C 0.043 3.957 19 H 0.100 0.900 20 F -0.199 7.199 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.479 6.136 -2.996 10.887 hybrid contribution 0.106 -0.282 -0.741 0.800 sum -8.373 5.854 -3.737 10.879 Atomic orbital electron populations 1.21812 0.94861 1.01961 1.01749 1.21674 0.96134 1.00335 0.95123 0.90514 1.22005 0.97404 1.00960 0.96247 1.21509 0.91808 0.98130 0.89268 1.48157 1.47539 1.39159 1.02958 1.18317 0.77291 0.77124 0.90805 1.90603 1.56811 1.64108 1.34287 1.20998 1.31693 1.13380 0.91862 0.90697 1.25749 0.94252 0.96283 0.97050 1.70020 1.24893 1.18412 1.26218 0.86312 0.78812 0.79270 0.82381 1.18688 1.20098 1.20134 1.21596 0.90421 0.99124 0.91387 1.22092 0.95979 0.96302 0.81336 0.89987 1.92745 1.89341 1.84317 1.53456 0.92428 0.92481 0.92640 0.91261 0.91167 0.88397 0.93808 0.92035 0.92976 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.06 37.16 0.34 -1.43 16 2 C -0.11 -1.63 2.48 -90.58 -0.23 -1.85 16 3 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 4 C -0.13 -1.87 5.36 -26.61 -0.14 -2.01 16 5 C 0.12 2.10 6.35 -3.71 -0.02 2.08 16 6 N -0.64 -14.42 2.97 -174.43 -0.52 -14.94 16 7 C 0.56 15.74 7.61 -12.99 -0.10 15.64 16 8 O -0.58 -18.58 14.48 5.19 0.08 -18.51 16 9 C -0.54 -14.88 8.88 -35.63 -0.32 -15.20 16 10 H 0.08 1.85 5.64 -52.48 -0.30 1.56 16 11 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 12 N -0.77 -22.70 11.84 55.55 0.66 -22.04 16 13 Si 0.91 19.65 29.56 -169.99 -5.02 14.63 16 14 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 C 0.10 2.02 6.16 -3.71 -0.02 2.00 16 18 C 0.08 1.37 3.45 -26.62 -0.09 1.28 16 19 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 20 F -0.22 -3.75 16.52 2.25 0.04 -3.71 16 21 H 0.06 0.69 7.77 -51.93 -0.40 0.29 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.10 1.83 5.30 -51.93 -0.28 1.56 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 2.13 7.04 -51.93 -0.37 1.76 16 LS Contribution 250.71 15.07 3.78 3.78 Total: -1.00 -32.45 250.71 -5.53 -37.98 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -3.86 Total: 0.04 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.68 Total: 2.78 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.14 Total: -36.98 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.08 Total: -18.51 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.45 -5.53 -37.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307358940.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.622 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds