Wall clock time and date at job start Mon Mar 30 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46233 * 2 1 4 4 C 1.53043 * 109.45994 * 240.04494 * 2 1 3 5 5 C 1.53186 * 109.31411 * 178.61259 * 4 2 1 6 6 N 1.46924 * 108.77676 * 54.63602 * 5 4 2 7 7 C 1.34770 * 120.63252 * 126.41259 * 6 5 4 8 8 O 1.21694 * 120.00278 * 354.73012 * 7 6 5 9 9 C 1.46378 * 120.00350 * 174.73267 * 7 6 5 10 10 H 1.08009 * 119.99359 * 348.74845 * 9 7 6 11 11 C 1.40040 * 120.00524 * 168.75421 * 9 7 6 12 12 N 1.30667 * 120.00345 * 170.76096 * 11 9 7 13 13 Si 1.86802 * 119.99804 * 350.75733 * 11 9 7 14 14 H 1.48501 * 109.46934 * 84.69394 * 13 11 9 15 15 H 1.48500 * 109.47307 * 204.69491 * 13 11 9 16 16 H 1.48502 * 109.47162 * 324.69367 * 13 11 9 17 17 C 1.46930 * 118.73626 * 306.39395 * 6 5 4 18 18 C 1.53034 * 109.46328 * 119.97765 * 2 1 3 19 19 H 1.09006 * 109.49815 * 301.36951 * 18 2 1 20 20 F 1.39902 * 109.49518 * 61.43227 * 18 2 1 21 21 H 1.08998 * 109.47090 * 300.02399 * 1 2 3 22 22 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47278 * 60.02513 * 1 2 3 24 24 H 1.08992 * 109.49883 * 298.56654 * 4 2 1 25 25 H 1.09012 * 109.49748 * 58.66222 * 4 2 1 26 26 H 1.09006 * 109.58729 * 294.84565 * 5 4 2 27 27 H 1.09005 * 109.70804 * 174.49121 * 5 4 2 28 28 H 0.97002 * 120.00651 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.58801 * 293.81789 * 17 6 5 30 30 H 1.09000 * 109.58457 * 173.39328 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7205 -1.2502 5 6 3.5713 -0.6883 -1.2645 6 7 4.0679 -1.2488 -0.0004 7 6 4.9620 -2.2571 -0.0006 8 8 5.2935 -2.7763 -1.0501 9 6 5.5346 -2.7279 1.2616 10 1 5.3861 -2.1588 2.1675 11 6 6.2750 -3.9162 1.2947 12 7 6.9359 -4.2444 2.3731 13 14 6.3177 -5.0320 -0.2029 14 1 7.3694 -4.5623 -1.1402 15 1 6.6198 -6.4219 0.2238 16 1 4.9979 -4.9987 -0.8828 17 6 3.5713 -0.6888 1.2640 18 6 2.0399 -0.7210 1.2499 19 1 1.6568 -0.2214 2.1398 20 9 1.6008 -2.0492 1.2345 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5135 -0.8902 24 1 1.6978 -1.7553 -1.2387 25 1 1.6571 -0.2203 -2.1400 26 1 3.9142 0.3413 -1.3674 27 1 3.9437 -1.2826 -2.0989 28 1 7.4490 -5.0673 2.3959 29 1 3.9142 0.3407 1.3674 30 1 3.9417 -1.2849 2.0981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307358942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:17 Heat of formation + Delta-G solvation = -106.912989 kcal Electronic energy + Delta-G solvation = -15197.734025 eV Core-core repulsion = 12520.461464 eV Total energy + Delta-G solvation = -2677.272561 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.14800 -38.61332 -36.29440 -33.11158 -32.82237 -30.46829 -27.95265 -26.35506 -22.92604 -22.76075 -20.32708 -18.87497 -16.94323 -16.08046 -15.41459 -15.36412 -15.07994 -14.62510 -14.09387 -13.41945 -13.08597 -12.83908 -12.64093 -12.22612 -12.20776 -11.81064 -11.67411 -11.38409 -10.98946 -10.85243 -10.71828 -10.36027 -10.17384 -10.00972 -9.34489 -9.00118 -7.88980 -7.54800 -6.60639 -4.82426 3.48652 3.51629 3.77037 4.13823 4.24825 4.59490 4.70516 4.85500 4.90179 5.09064 5.40858 5.46471 5.54374 5.62309 5.68026 5.78914 5.91912 6.05390 6.07631 6.22387 6.31634 6.34528 6.40101 6.64238 7.07561 7.63012 7.87231 8.30497 8.71582 9.14052 10.04931 10.40010 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.010262 C = 0.009499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.181513 B = 2727.743791 C = 2946.990549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 H 0.083 0.917 4 C -0.129 4.129 5 C 0.116 3.884 6 N -0.629 5.629 7 C 0.555 3.445 8 O -0.616 6.616 9 C -0.531 4.531 10 H 0.089 0.911 11 C 0.102 3.898 12 N -0.828 5.828 13 Si 0.968 3.032 14 H -0.279 1.279 15 H -0.323 1.323 16 H -0.263 1.263 17 C 0.095 3.905 18 C 0.081 3.919 19 H 0.082 0.918 20 F -0.205 7.205 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.282 0.718 29 H 0.063 0.937 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 8.720 -1.945 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.363 5.363 7 C 0.365 3.635 8 O -0.508 6.508 9 C -0.566 4.566 10 H 0.107 0.893 11 C -0.116 4.116 12 N -0.458 5.458 13 Si 0.801 3.199 14 H -0.205 1.205 15 H -0.254 1.254 16 H -0.189 1.189 17 C -0.030 4.030 18 C 0.044 3.956 19 H 0.099 0.901 20 F -0.186 7.186 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.934 8.354 -2.332 13.187 hybrid contribution -0.043 -0.378 -0.390 0.545 sum -9.977 7.976 -2.722 13.060 Atomic orbital electron populations 1.21813 0.94768 1.02364 1.01450 1.21693 0.96247 0.99994 0.95609 0.89895 1.21949 0.96829 1.01425 0.96510 1.21271 0.92228 0.97786 0.89464 1.47575 1.46283 1.38590 1.03871 1.18303 0.77413 0.77532 0.90217 1.90179 1.66510 1.58914 1.35229 1.20754 1.32421 1.09316 0.94134 0.89295 1.25769 0.90480 0.97633 0.97752 1.69554 1.23404 1.23532 1.29264 0.85196 0.80774 0.74107 0.79841 1.20542 1.25413 1.18870 1.22098 0.91015 0.99692 0.90185 1.22032 0.96257 0.78861 0.98497 0.90052 1.92809 1.90778 1.37272 1.97721 0.92766 0.92169 0.92521 0.91110 0.91437 0.93463 0.89376 0.90794 0.91847 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.08 37.16 0.34 -1.31 16 2 C -0.12 -1.54 2.54 -90.58 -0.23 -1.77 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.13 -1.96 5.24 -26.61 -0.14 -2.10 16 5 C 0.12 2.14 6.44 -3.71 -0.02 2.12 16 6 N -0.63 -13.86 2.95 -174.43 -0.51 -14.37 16 7 C 0.56 15.17 7.35 -12.99 -0.10 15.07 16 8 O -0.62 -18.27 11.68 5.19 0.06 -18.21 16 9 C -0.53 -15.21 9.22 -35.63 -0.33 -15.54 16 10 H 0.09 2.51 6.20 -52.48 -0.33 2.18 16 11 C 0.10 2.96 5.52 -17.37 -0.10 2.86 16 12 N -0.83 -23.84 13.92 55.55 0.77 -23.07 16 13 Si 0.97 26.21 25.86 -169.99 -4.40 21.82 16 14 H -0.28 -7.72 7.11 56.52 0.40 -7.31 16 15 H -0.32 -8.25 7.11 56.52 0.40 -7.84 16 16 H -0.26 -7.54 6.61 56.52 0.37 -7.16 16 17 C 0.09 1.72 6.03 -3.71 -0.02 1.70 16 18 C 0.08 1.25 3.56 -26.62 -0.09 1.16 16 19 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 20 F -0.20 -3.95 16.01 2.25 0.04 -3.91 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.25 7.73 -51.93 -0.40 0.85 16 25 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.81 6.99 -51.93 -0.36 1.44 16 28 H 0.28 7.48 8.29 -40.82 -0.34 7.14 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.11 2.20 5.51 -51.93 -0.29 1.91 16 LS Contribution 245.80 15.07 3.70 3.70 Total: -1.00 -32.71 245.80 -4.93 -37.64 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -3.90 Total: -5.79 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.69 Total: 2.18 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.26 Total: -37.44 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.06 Total: -18.21 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.40 Total: 21.82 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.71 -4.93 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307358942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.273 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds