Wall clock time and date at job start Mon Mar 30 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46233 * 2 1 4 4 C 1.53043 * 109.45994 * 240.04494 * 2 1 3 5 5 C 1.53186 * 109.31411 * 178.61259 * 4 2 1 6 6 N 1.46924 * 108.77676 * 54.63602 * 5 4 2 7 7 C 1.34770 * 120.63252 * 126.41259 * 6 5 4 8 8 O 1.21694 * 120.00278 * 354.73012 * 7 6 5 9 9 C 1.46378 * 120.00350 * 174.73267 * 7 6 5 10 10 H 1.08009 * 119.99359 * 348.74845 * 9 7 6 11 11 C 1.40040 * 120.00524 * 168.75421 * 9 7 6 12 12 N 1.30667 * 120.00345 * 170.76096 * 11 9 7 13 13 Si 1.86802 * 119.99804 * 350.75733 * 11 9 7 14 14 H 1.48501 * 109.46934 * 84.69394 * 13 11 9 15 15 H 1.48500 * 109.47307 * 204.69491 * 13 11 9 16 16 H 1.48502 * 109.47162 * 324.69367 * 13 11 9 17 17 C 1.46930 * 118.73626 * 306.39395 * 6 5 4 18 18 C 1.53034 * 109.46328 * 119.97765 * 2 1 3 19 19 H 1.09006 * 109.49815 * 301.36951 * 18 2 1 20 20 F 1.39902 * 109.49518 * 61.43227 * 18 2 1 21 21 H 1.08998 * 109.47090 * 300.02399 * 1 2 3 22 22 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47278 * 60.02513 * 1 2 3 24 24 H 1.08992 * 109.49883 * 298.56654 * 4 2 1 25 25 H 1.09012 * 109.49748 * 58.66222 * 4 2 1 26 26 H 1.09006 * 109.58729 * 294.84565 * 5 4 2 27 27 H 1.09005 * 109.70804 * 174.49121 * 5 4 2 28 28 H 0.97002 * 120.00651 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.58801 * 293.81789 * 17 6 5 30 30 H 1.09000 * 109.58457 * 173.39328 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7205 -1.2502 5 6 3.5713 -0.6883 -1.2645 6 7 4.0679 -1.2488 -0.0004 7 6 4.9620 -2.2571 -0.0006 8 8 5.2935 -2.7763 -1.0501 9 6 5.5346 -2.7279 1.2616 10 1 5.3861 -2.1588 2.1675 11 6 6.2750 -3.9162 1.2947 12 7 6.9359 -4.2444 2.3731 13 14 6.3177 -5.0320 -0.2029 14 1 7.3694 -4.5623 -1.1402 15 1 6.6198 -6.4219 0.2238 16 1 4.9979 -4.9987 -0.8828 17 6 3.5713 -0.6888 1.2640 18 6 2.0399 -0.7210 1.2499 19 1 1.6568 -0.2214 2.1398 20 9 1.6008 -2.0492 1.2345 21 1 -0.3633 0.5142 0.8898 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5135 -0.8902 24 1 1.6978 -1.7553 -1.2387 25 1 1.6571 -0.2203 -2.1400 26 1 3.9142 0.3413 -1.3674 27 1 3.9437 -1.2826 -2.0989 28 1 7.4490 -5.0673 2.3959 29 1 3.9142 0.3407 1.3674 30 1 3.9417 -1.2849 2.0981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307358942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:17 Heat of formation + Delta-G solvation = -129.348758 kcal Electronic energy + Delta-G solvation = -15198.706912 eV Core-core repulsion = 12520.461464 eV Total energy + Delta-G solvation = -2678.245449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.51973 -40.38435 -37.95335 -35.03355 -34.60478 -31.86293 -29.48915 -28.19234 -24.27225 -24.21408 -21.89299 -20.42600 -18.83523 -18.06671 -17.07393 -16.69187 -16.54264 -16.34605 -15.71922 -15.08893 -14.64677 -14.33983 -14.22033 -13.96515 -13.73497 -13.36461 -13.21371 -13.08192 -12.55655 -12.47280 -12.17727 -11.94796 -11.65815 -11.35010 -11.25144 -11.07930 -10.01452 -9.31249 -8.82782 -7.03487 1.28901 1.33144 1.57146 2.05128 2.31723 2.64519 3.26821 3.59750 3.65452 3.84301 3.90027 4.11722 4.36885 4.47043 4.57915 4.69250 4.81775 4.86011 4.87718 4.91639 5.04366 5.06911 5.22168 5.32743 5.48964 5.64687 5.96955 6.20382 6.58366 7.09073 7.94994 8.22773 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.010262 C = 0.009499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.181513 B = 2727.743791 C = 2946.990549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 H 0.115 0.885 4 C -0.122 4.122 5 C 0.110 3.890 6 N -0.632 5.632 7 C 0.548 3.452 8 O -0.648 6.648 9 C -0.550 4.550 10 H 0.086 0.914 11 C 0.070 3.930 12 N -0.847 5.847 13 Si 1.011 2.989 14 H -0.290 1.290 15 H -0.297 1.297 16 H -0.292 1.292 17 C 0.087 3.913 18 C 0.074 3.926 19 H 0.122 0.878 20 F -0.232 7.232 21 H 0.073 0.927 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.292 0.708 29 H 0.100 0.900 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 10.712 -2.020 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.133 0.867 4 C -0.161 4.161 5 C -0.012 4.012 6 N -0.364 5.364 7 C 0.356 3.644 8 O -0.543 6.543 9 C -0.586 4.586 10 H 0.104 0.896 11 C -0.146 4.146 12 N -0.477 5.477 13 Si 0.844 3.156 14 H -0.217 1.217 15 H -0.227 1.227 16 H -0.220 1.220 17 C -0.036 4.036 18 C 0.037 3.963 19 H 0.140 0.860 20 F -0.213 7.213 21 H 0.092 0.908 22 H 0.058 0.942 23 H 0.095 0.905 24 H 0.056 0.944 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.379 10.365 -2.376 15.574 hybrid contribution 0.366 -0.897 -0.368 1.036 sum -11.013 9.468 -2.744 14.780 Atomic orbital electron populations 1.21776 0.92917 1.01720 1.03474 1.21728 0.97682 1.00677 0.92775 0.86722 1.21906 0.94183 1.00445 0.99523 1.21531 0.94532 0.98518 0.86657 1.47568 1.44828 1.37221 1.06766 1.18279 0.78234 0.78672 0.89199 1.90144 1.67773 1.60393 1.35949 1.21002 1.33091 1.09650 0.94879 0.89642 1.26227 0.90792 0.98585 0.99015 1.69547 1.24008 1.24487 1.29692 0.84601 0.78623 0.74562 0.77803 1.21727 1.22710 1.21959 1.22350 0.93240 1.00714 0.87345 1.22382 0.94111 0.78014 1.01776 0.86049 1.92763 1.90900 1.39660 1.97978 0.90763 0.94163 0.90545 0.94362 0.88002 0.90151 0.92354 0.89738 0.88170 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.08 71.98 0.65 -1.93 16 2 C -0.11 -2.46 2.54 -10.77 -0.03 -2.48 16 3 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.12 -3.42 5.24 30.67 0.16 -3.26 16 5 C 0.11 3.88 6.44 86.36 0.56 4.44 16 6 N -0.63 -27.41 2.95 -823.99 -2.43 -29.84 16 7 C 0.55 30.43 7.35 86.36 0.63 31.06 16 8 O -0.65 -39.30 11.68 -4.33 -0.05 -39.35 16 9 C -0.55 -32.14 9.22 24.83 0.23 -31.91 16 10 H 0.09 4.93 6.20 -2.91 -0.02 4.91 16 11 C 0.07 4.11 5.52 85.30 0.47 4.58 16 12 N -0.85 -48.96 13.92 21.83 0.30 -48.65 16 13 Si 1.01 54.89 25.86 68.60 1.77 56.66 16 14 H -0.29 -16.10 7.11 99.48 0.71 -15.40 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 16 H -0.29 -17.13 6.61 99.48 0.66 -16.47 16 17 C 0.09 3.00 6.03 86.36 0.52 3.52 16 18 C 0.07 2.08 3.56 30.67 0.11 2.19 16 19 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 20 F -0.23 -8.77 16.01 44.97 0.72 -8.05 16 21 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.04 0.90 7.84 -2.39 -0.02 0.88 16 23 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.04 1.32 7.73 -2.39 -0.02 1.30 16 25 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.06 2.40 6.99 -2.38 -0.02 2.38 16 28 H 0.29 15.42 8.29 -92.71 -0.77 14.65 16 29 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.08 3.26 5.51 -2.39 -0.01 3.25 16 Total: -1.00 -72.52 245.80 4.70 -67.81 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: 1.08 Total: -4.77 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 3.31 Total: 6.20 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.13 Total: -78.50 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.05 Total: -39.35 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.72 Total: -8.05 kcal Atomic # 14 Polarization: 54.89 SS G_CDS: 1.77 Total: 56.66 kcal Total: -72.52 4.70 -67.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307358942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.535 kcal (2) G-P(sol) polarization free energy of solvation -72.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds