Wall clock time and date at job start Mon Mar 30 2020 03:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46847 * 2 1 4 4 C 1.50704 * 109.46563 * 239.99789 * 2 1 3 5 5 H 1.07993 * 119.99530 * 245.46007 * 4 2 1 6 6 C 1.37876 * 119.99835 * 65.46476 * 4 2 1 7 7 N 1.31506 * 120.00319 * 9.54054 * 6 4 2 8 8 Si 1.86803 * 119.99669 * 189.54034 * 6 4 2 9 9 H 1.48499 * 109.47017 * 84.99451 * 8 6 4 10 10 H 1.48498 * 109.46998 * 204.99002 * 8 6 4 11 11 H 1.48500 * 109.47157 * 324.99581 * 8 6 4 12 12 N 1.46894 * 109.46954 * 119.99646 * 2 1 3 13 13 C 1.46899 * 111.00437 * 274.99595 * 12 2 1 14 14 H 1.09001 * 109.59383 * 33.87415 * 13 12 2 15 15 C 1.52935 * 109.60495 * 273.54864 * 13 12 2 16 16 C 1.53706 * 112.49133 * 209.96675 * 15 13 12 17 17 S 1.83390 * 104.96743 * 2.82550 * 16 15 13 18 18 C 1.55154 * 109.60414 * 154.01241 * 13 12 2 19 19 H 1.08997 * 111.12989 * 43.45911 * 18 13 12 20 20 C 1.53004 * 111.13091 * 279.28117 * 18 13 12 21 21 H 1.08996 * 109.47214 * 183.75513 * 1 2 3 22 22 H 1.09000 * 109.46743 * 303.74965 * 1 2 3 23 23 H 1.09000 * 109.47358 * 63.74669 * 1 2 3 24 24 H 0.96999 * 120.00353 * 180.02562 * 7 6 4 25 25 H 1.00906 * 110.99914 * 151.04253 * 12 2 1 26 26 H 1.08998 * 108.88664 * 330.76482 * 15 13 12 27 27 H 1.09007 * 108.88417 * 89.31179 * 15 13 12 28 28 H 1.09000 * 110.34188 * 121.70186 * 16 15 13 29 29 H 1.08996 * 110.34066 * 243.84651 * 16 15 13 30 30 H 1.09005 * 109.47230 * 60.00079 * 20 18 13 31 31 H 1.08995 * 109.46996 * 179.97438 * 20 18 13 32 32 H 1.09003 * 109.47259 * 300.00514 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5784 -1.6371 -1.1338 6 6 1.7945 -0.1774 -2.4796 7 7 1.2990 1.0354 -2.5936 8 14 2.1762 -1.1780 -4.0102 9 1 1.0244 -2.0612 -4.3242 10 1 2.4227 -0.2613 -5.1521 11 1 3.3848 -2.0071 -3.7709 12 7 2.0197 -0.6924 1.1994 13 6 2.0826 0.2227 2.3469 14 1 1.2703 0.9466 2.2820 15 6 3.4247 0.9558 2.3455 16 6 3.8945 1.3250 3.7617 17 16 2.6241 0.6201 4.8809 18 6 1.9508 -0.5852 3.6649 19 1 2.5564 -1.4910 3.6328 20 6 0.4872 -0.9138 3.9665 21 1 -0.3633 -1.0254 0.0673 22 1 -0.3633 0.5709 0.8545 23 1 -0.3634 0.4546 -0.9216 24 1 1.1314 1.4103 -3.4723 25 1 2.9173 -1.1205 1.0287 26 1 4.1753 0.3170 1.8801 27 1 3.3271 1.8694 1.7589 28 1 4.8683 0.8800 3.9659 29 1 3.9424 2.4080 3.8747 30 1 0.0726 -1.5070 3.1514 31 1 0.4261 -1.4806 4.8954 32 1 -0.0797 0.0118 4.0671 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307685840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:13 Heat of formation + Delta-G solvation = -15.864385 kcal Electronic energy + Delta-G solvation = -12945.301109 eV Core-core repulsion = 10838.189888 eV Total energy + Delta-G solvation = -2107.111221 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.58740 -34.10966 -31.68500 -31.59196 -28.26343 -25.36976 -24.55669 -22.92576 -20.40564 -19.65943 -16.53350 -16.18445 -15.35335 -14.62131 -14.29835 -14.03042 -13.54281 -13.15196 -12.63567 -12.49953 -12.04579 -11.66900 -11.51052 -11.19320 -10.93962 -10.86177 -10.77610 -10.41517 -10.33712 -10.26838 -10.09061 -9.56106 -8.94397 -8.50834 -7.55104 -7.39073 -6.11864 -4.14489 2.08161 2.55049 3.26757 3.33387 3.35579 4.35895 4.81407 4.96796 5.10640 5.16398 5.22931 5.42798 5.59211 5.60340 5.79761 5.95234 6.03965 6.14876 6.31856 6.39480 6.50317 6.76209 7.02854 7.09916 7.34254 7.72100 7.76802 8.08718 8.24438 8.56958 8.95578 9.50885 10.97157 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050550 B = 0.007513 C = 0.007125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.768781 B = 3725.770310 C = 3928.638533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.211 3.789 3 H 0.010 0.990 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.676 5.676 13 C 0.089 3.911 14 H 0.086 0.914 15 C -0.157 4.157 16 C -0.060 4.060 17 S -0.327 6.327 18 C -0.014 4.014 19 H 0.094 0.906 20 C -0.124 4.124 21 H 0.035 0.965 22 H 0.009 0.991 23 H 0.063 0.937 24 H 0.262 0.738 25 H 0.334 0.666 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -0.800 9.726 10.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 H 0.028 0.972 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.306 5.306 13 C -0.024 4.024 14 H 0.104 0.896 15 C -0.197 4.197 16 C -0.209 4.209 17 S -0.102 6.102 18 C -0.143 4.143 19 H 0.112 0.888 20 C -0.183 4.183 21 H 0.054 0.946 22 H 0.028 0.972 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.152 0.848 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.329 -0.656 10.886 10.987 hybrid contribution 1.349 -0.083 -2.308 2.675 sum 2.678 -0.739 8.578 9.017 Atomic orbital electron populations 1.21670 0.98207 0.98881 0.99050 1.19134 0.92144 0.92992 0.85392 0.97204 1.21193 1.36200 1.08238 0.90573 0.92189 1.24910 0.95156 0.94595 0.99061 1.69960 1.44704 1.13937 1.23928 0.86598 0.78773 0.80059 0.82481 1.20459 1.21367 1.19983 1.60802 1.32244 1.31840 1.05757 1.22511 0.95657 0.93108 0.91127 0.89572 1.22765 0.99079 1.02729 0.95126 1.23756 0.98583 1.03147 0.95377 1.87627 1.46179 1.49768 1.26577 1.24094 0.99769 0.97720 0.92683 0.88764 1.21536 0.92953 1.02106 1.01664 0.94622 0.97207 0.91838 0.92835 0.84803 0.90930 0.90366 0.89770 0.88979 0.89989 0.92878 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 9.26 37.16 0.34 -2.48 16 2 C 0.21 5.07 2.28 -68.86 -0.16 4.92 16 3 H 0.01 0.27 7.65 -51.93 -0.40 -0.13 16 4 C -0.52 -13.86 8.48 -34.44 -0.29 -14.15 16 5 H 0.06 1.57 7.69 -52.49 -0.40 1.17 16 6 C 0.07 1.77 5.17 -17.82 -0.09 1.68 16 7 N -0.89 -24.96 12.16 55.43 0.67 -24.28 16 8 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.68 -13.43 6.08 -99.79 -0.61 -14.03 16 13 C 0.09 1.54 2.11 -66.61 -0.14 1.39 16 14 H 0.09 1.63 7.06 -51.93 -0.37 1.26 16 15 C -0.16 -2.45 5.77 -26.40 -0.15 -2.60 16 16 C -0.06 -0.81 7.38 37.52 0.28 -0.53 16 17 S -0.33 -4.92 22.71 -107.50 -2.44 -7.37 16 18 C -0.01 -0.21 3.57 -25.59 -0.09 -0.30 16 19 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 20 C -0.12 -1.77 9.40 37.16 0.35 -1.42 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.01 0.20 7.49 -51.93 -0.39 -0.19 16 23 H 0.06 1.64 6.83 -51.93 -0.35 1.29 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.33 6.54 7.58 -39.29 -0.30 6.24 16 26 H 0.07 1.13 7.48 -51.93 -0.39 0.74 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 270.49 15.07 4.08 4.08 Total: -1.00 -27.03 270.49 -8.39 -35.42 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.11 Total: 3.84 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 0.04 Total: -13.50 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.07 Total: -38.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.44 Total: -7.37 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.03 -8.39 -35.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.556 kcal (2) G-P(sol) polarization free energy of solvation -27.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds