Wall clock time and date at job start Mon Mar 30 2020 03:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46847 * 2 1 4 4 C 1.50704 * 109.46563 * 239.99789 * 2 1 3 5 5 H 1.07993 * 119.99530 * 245.46007 * 4 2 1 6 6 C 1.37876 * 119.99835 * 65.46476 * 4 2 1 7 7 N 1.31506 * 120.00319 * 9.54054 * 6 4 2 8 8 Si 1.86803 * 119.99669 * 189.54034 * 6 4 2 9 9 H 1.48499 * 109.47017 * 84.99451 * 8 6 4 10 10 H 1.48498 * 109.46998 * 204.99002 * 8 6 4 11 11 H 1.48500 * 109.47157 * 324.99581 * 8 6 4 12 12 N 1.46894 * 109.46954 * 119.99646 * 2 1 3 13 13 C 1.46899 * 111.00437 * 274.99595 * 12 2 1 14 14 H 1.09001 * 109.59383 * 33.87415 * 13 12 2 15 15 C 1.52935 * 109.60495 * 273.54864 * 13 12 2 16 16 C 1.53706 * 112.49133 * 209.96675 * 15 13 12 17 17 S 1.83390 * 104.96743 * 2.82550 * 16 15 13 18 18 C 1.55154 * 109.60414 * 154.01241 * 13 12 2 19 19 H 1.08997 * 111.12989 * 43.45911 * 18 13 12 20 20 C 1.53004 * 111.13091 * 279.28117 * 18 13 12 21 21 H 1.08996 * 109.47214 * 183.75513 * 1 2 3 22 22 H 1.09000 * 109.46743 * 303.74965 * 1 2 3 23 23 H 1.09000 * 109.47358 * 63.74669 * 1 2 3 24 24 H 0.96999 * 120.00353 * 180.02562 * 7 6 4 25 25 H 1.00906 * 110.99914 * 151.04253 * 12 2 1 26 26 H 1.08998 * 108.88664 * 330.76482 * 15 13 12 27 27 H 1.09007 * 108.88417 * 89.31179 * 15 13 12 28 28 H 1.09000 * 110.34188 * 121.70186 * 16 15 13 29 29 H 1.08996 * 110.34066 * 243.84651 * 16 15 13 30 30 H 1.09005 * 109.47230 * 60.00079 * 20 18 13 31 31 H 1.08995 * 109.46996 * 179.97438 * 20 18 13 32 32 H 1.09003 * 109.47259 * 300.00514 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5784 -1.6371 -1.1338 6 6 1.7945 -0.1774 -2.4796 7 7 1.2990 1.0354 -2.5936 8 14 2.1762 -1.1780 -4.0102 9 1 1.0244 -2.0612 -4.3242 10 1 2.4227 -0.2613 -5.1521 11 1 3.3848 -2.0071 -3.7709 12 7 2.0197 -0.6924 1.1994 13 6 2.0826 0.2227 2.3469 14 1 1.2703 0.9466 2.2820 15 6 3.4247 0.9558 2.3455 16 6 3.8945 1.3250 3.7617 17 16 2.6241 0.6201 4.8809 18 6 1.9508 -0.5852 3.6649 19 1 2.5564 -1.4910 3.6328 20 6 0.4872 -0.9138 3.9665 21 1 -0.3633 -1.0254 0.0673 22 1 -0.3633 0.5709 0.8545 23 1 -0.3634 0.4546 -0.9216 24 1 1.1314 1.4103 -3.4723 25 1 2.9173 -1.1205 1.0287 26 1 4.1753 0.3170 1.8801 27 1 3.3271 1.8694 1.7589 28 1 4.8683 0.8800 3.9659 29 1 3.9424 2.4080 3.8747 30 1 0.0726 -1.5070 3.1514 31 1 0.4261 -1.4806 4.8954 32 1 -0.0797 0.0118 4.0671 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307685840.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:13 Heat of formation + Delta-G solvation = -31.723637 kcal Electronic energy + Delta-G solvation = -12945.988818 eV Core-core repulsion = 10838.189888 eV Total energy + Delta-G solvation = -2107.798930 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.09263 -35.89317 -33.47753 -32.82783 -29.97947 -27.31367 -26.03673 -24.14867 -22.15421 -21.18144 -18.47648 -17.48403 -16.98347 -16.24538 -15.76020 -15.44645 -15.03319 -14.49391 -14.32418 -13.97842 -13.62598 -13.24069 -12.87863 -12.75749 -12.66666 -12.62719 -12.28440 -12.22715 -11.95122 -11.84509 -11.61621 -11.02629 -10.78000 -10.54193 -9.09661 -8.71336 -8.17646 -6.26680 0.89802 1.35431 1.41815 1.44300 1.52271 2.41343 3.14726 3.46784 3.66845 3.80232 3.95572 4.17900 4.22930 4.41235 4.55894 4.76164 4.82721 4.89188 4.92053 5.01855 5.05327 5.10061 5.19392 5.31748 5.44508 5.66622 5.81338 6.14298 6.41680 6.74954 6.99108 7.42988 8.91063 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050550 B = 0.007513 C = 0.007125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.768781 B = 3725.770310 C = 3928.638533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.218 3.782 3 H -0.022 1.022 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.669 5.669 13 C 0.090 3.910 14 H 0.066 0.934 15 C -0.153 4.153 16 C -0.051 4.051 17 S -0.334 6.334 18 C -0.008 4.008 19 H 0.101 0.899 20 C -0.121 4.121 21 H 0.038 0.962 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.262 0.738 25 H 0.336 0.664 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -1.623 10.442 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 H -0.005 1.005 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.300 5.300 13 C -0.023 4.023 14 H 0.085 0.915 15 C -0.193 4.193 16 C -0.199 4.199 17 S -0.108 6.108 18 C -0.136 4.136 19 H 0.119 0.881 20 C -0.179 4.179 21 H 0.057 0.943 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.047 -1.487 11.625 11.898 hybrid contribution 1.139 0.209 -2.476 2.733 sum 3.186 -1.278 9.149 9.772 Atomic orbital electron populations 1.21504 0.97980 0.98918 0.98298 1.18883 0.92263 0.91307 0.86557 1.00470 1.21535 1.36081 1.08278 0.91686 0.92123 1.25676 0.95151 0.95423 1.01983 1.70078 1.45796 1.15327 1.24499 0.85610 0.78775 0.78603 0.78884 1.20137 1.21247 1.19126 1.60700 1.32443 1.31986 1.04864 1.22509 0.95928 0.92805 0.91052 0.91542 1.22651 0.98217 1.01864 0.96595 1.23791 0.98860 1.04157 0.93099 1.87686 1.46790 1.49803 1.26563 1.24007 1.00633 0.97631 0.91377 0.88118 1.21513 0.92125 1.02035 1.02240 0.94324 0.95698 0.94484 0.92884 0.84533 0.90772 0.91824 0.87681 0.87632 0.90842 0.91037 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.17 9.26 71.98 0.67 -4.50 16 2 C 0.22 10.61 2.28 44.17 0.10 10.71 16 3 H -0.02 -1.22 7.65 -2.39 -0.02 -1.24 16 4 C -0.54 -28.46 8.48 25.60 0.22 -28.25 16 5 H 0.06 3.14 7.69 -2.91 -0.02 3.12 16 6 C 0.02 0.94 5.17 84.66 0.44 1.38 16 7 N -0.92 -52.32 12.16 21.45 0.26 -52.05 16 8 Si 0.96 42.61 29.55 68.60 2.03 44.64 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 N -0.67 -26.30 6.08 -469.64 -2.86 -29.16 16 13 C 0.09 3.03 2.11 45.63 0.10 3.13 16 14 H 0.07 2.52 7.06 -2.39 -0.02 2.50 16 15 C -0.15 -4.63 5.77 30.81 0.18 -4.45 16 16 C -0.05 -1.25 7.38 72.22 0.53 -0.72 16 17 S -0.33 -9.34 22.71 -56.49 -1.28 -10.62 16 18 C -0.01 -0.22 3.57 31.33 0.11 -0.11 16 19 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 20 C -0.12 -3.24 9.40 71.98 0.68 -2.57 16 21 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.02 1.06 7.49 -2.39 -0.02 1.04 16 23 H 0.04 1.93 6.83 -2.39 -0.02 1.92 16 24 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.34 12.92 7.58 -89.69 -0.68 12.24 16 26 H 0.07 2.22 7.48 -2.39 -0.02 2.20 16 27 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -56.54 270.49 1.57 -54.97 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.41 Total: 17.60 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: 3.02 Total: -25.37 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -2.59 Total: -81.21 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: -9.34 SS G_CDS: -1.28 Total: -10.62 kcal Total: -56.54 1.57 -54.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307685840.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.247 kcal (2) G-P(sol) polarization free energy of solvation -56.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds