Wall clock time and date at job start Mon Mar 30 2020 02:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86808 * 119.99624 * 2 1 4 4 H 1.48501 * 109.46976 * 264.99848 * 3 2 1 5 5 H 1.48501 * 109.46879 * 144.99742 * 3 2 1 6 6 H 1.48495 * 109.46895 * 25.00060 * 3 2 1 7 7 C 1.40044 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99957 * 185.14289 * 7 2 1 9 9 C 1.46380 * 119.99897 * 5.14713 * 7 2 1 10 10 O 1.21680 * 119.99728 * 5.39056 * 9 7 2 11 11 N 1.34780 * 119.99657 * 185.39214 * 9 7 2 12 12 C 1.47596 * 118.63877 * 175.11254 * 11 9 7 13 13 C 1.54303 * 111.94423 * 137.77968 * 12 11 9 14 14 C 1.50877 * 110.22863 * 319.69765 * 13 12 11 15 15 C 1.52567 * 109.36043 * 91.80131 * 14 13 12 16 16 C 1.47091 * 114.32423 * 274.98661 * 15 14 13 17 17 H 1.09004 * 109.33036 * 302.53572 * 16 15 14 18 18 F 1.39898 * 109.32836 * 183.05937 * 16 15 14 19 19 C 1.44577 * 118.64551 * 355.38011 * 11 9 7 20 20 H 0.96997 * 120.00297 * 0.02562 * 1 2 3 21 21 H 1.09008 * 108.95027 * 258.57486 * 12 11 9 22 22 H 1.09000 * 108.95372 * 17.20219 * 12 11 9 23 23 H 1.09000 * 109.36439 * 199.41989 * 13 12 11 24 24 H 1.08996 * 109.12126 * 79.82331 * 13 12 11 25 25 H 1.08998 * 109.49676 * 331.83170 * 14 13 12 26 26 H 1.09005 * 109.50352 * 211.77139 * 14 13 12 27 27 H 1.08994 * 108.51968 * 153.72842 * 15 14 13 28 28 H 1.08999 * 108.51291 * 36.23627 * 15 14 13 29 29 H 1.08998 * 109.45040 * 30.74418 * 19 11 9 30 30 H 1.09001 * 109.44761 * 150.69157 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 2.5939 1.9855 -1.3948 5 1 3.4814 1.4732 0.8031 6 1 1.3892 2.6809 0.5917 7 6 2.0071 -1.2128 0.0005 8 1 3.0838 -1.2146 0.0844 9 6 1.2796 -2.4780 -0.1126 10 8 0.0782 -2.4738 -0.3056 11 7 1.9407 -3.6474 -0.0031 12 6 1.1641 -4.9026 -0.0124 13 6 1.8393 -5.9920 -0.8715 14 6 2.4073 -5.3857 -2.1309 15 6 3.8593 -4.9846 -1.8889 16 6 4.0275 -3.6553 -1.2820 17 1 3.5528 -2.9065 -1.9161 18 9 5.3918 -3.3660 -1.1715 19 6 3.3805 -3.6204 0.1246 20 1 -0.4850 0.8400 -0.0004 21 1 1.0648 -5.2650 1.0109 22 1 0.1705 -4.7011 -0.4127 23 1 1.1034 -6.7515 -1.1359 24 1 2.6434 -6.4522 -0.2973 25 1 1.8272 -4.5043 -2.4040 26 1 2.3617 -6.1159 -2.9390 27 1 4.3860 -4.9986 -2.8430 28 1 4.3182 -5.7248 -1.2335 29 1 3.6821 -2.7087 0.6403 30 1 3.7105 -4.4873 0.6971 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307731544.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:17 Heat of formation + Delta-G solvation = -116.136317 kcal Electronic energy + Delta-G solvation = -15218.535738 eV Core-core repulsion = 12540.863223 eV Total energy + Delta-G solvation = -2677.672514 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.62802 -40.36461 -37.69796 -34.75921 -34.34723 -32.85464 -28.71613 -27.24796 -26.01981 -23.04513 -21.60617 -20.51672 -18.66630 -17.87752 -17.29535 -17.08114 -16.28474 -16.14138 -15.44228 -15.12461 -14.72627 -14.30145 -14.13267 -13.91061 -13.39697 -13.14194 -12.87206 -12.66987 -12.50519 -12.26426 -12.09805 -11.97211 -11.61414 -11.39687 -11.28992 -10.94558 -9.81302 -9.13748 -8.33314 -6.86480 1.37884 1.38951 1.53243 2.21325 2.41193 2.73254 3.45260 3.58966 3.77313 3.88264 4.00113 4.12328 4.25175 4.48116 4.59068 4.69889 4.78193 4.84597 4.95553 5.07895 5.17510 5.19771 5.29381 5.37694 5.42613 5.78392 6.13337 6.35994 6.85815 7.35391 8.42985 8.63441 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.032733 B = 0.011663 C = 0.009241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.194316 B = 2400.142886 C = 3029.299433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.033 3.967 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.249 1.249 6 H -0.271 1.271 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.538 3.462 10 O -0.629 6.629 11 N -0.632 5.632 12 C 0.112 3.888 13 C -0.118 4.118 14 C -0.106 4.106 15 C -0.138 4.138 16 C 0.078 3.922 17 H 0.057 0.943 18 F -0.220 7.220 19 C 0.112 3.888 20 H 0.275 0.725 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.033 0.967 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.893 -8.595 -1.842 12.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.173 1.173 6 H -0.196 1.196 7 C -0.605 4.605 8 H 0.107 0.893 9 C 0.344 3.656 10 O -0.516 6.516 11 N -0.368 5.368 12 C -0.010 4.010 13 C -0.156 4.156 14 C -0.144 4.144 15 C -0.175 4.175 16 C 0.039 3.961 17 H 0.075 0.925 18 F -0.201 7.201 19 C -0.014 4.014 20 H 0.085 0.915 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.115 -8.549 -1.918 11.942 hybrid contribution -0.007 0.987 0.005 0.987 sum 8.108 -7.562 -1.913 11.251 Atomic orbital electron populations 1.70153 1.09426 1.29007 1.36287 1.26907 0.95421 1.04742 0.91193 0.85172 0.78878 0.75565 0.79648 1.18730 1.17258 1.19598 1.21495 0.95023 0.90122 1.53896 0.89332 1.18671 0.86450 0.84321 0.76158 1.90534 1.17425 1.87492 1.56132 1.47434 1.05802 1.05705 1.77812 1.21711 0.95465 0.84545 0.99299 1.21813 1.01378 0.96670 0.95775 1.20879 0.94413 1.00444 0.98676 1.20962 0.98457 0.95741 1.02389 1.21230 0.76004 0.99058 0.99763 0.92485 1.92757 1.34605 1.95271 1.97478 1.21738 0.81026 1.03671 0.94915 0.91518 0.93001 0.93356 0.89118 0.89670 0.94845 0.88926 0.90454 0.89182 0.90641 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.12 11.88 21.84 0.26 -49.86 16 2 C 0.03 1.84 5.49 85.30 0.47 2.31 16 3 Si 0.99 41.36 29.56 68.60 2.03 43.38 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.57 -32.12 8.66 24.83 0.22 -31.90 16 8 H 0.09 4.56 5.90 -2.91 -0.02 4.55 16 9 C 0.54 30.99 7.53 86.36 0.65 31.64 16 10 O -0.63 -41.90 14.34 -4.29 -0.06 -41.96 16 11 N -0.63 -28.17 2.23 -822.57 -1.83 -30.00 16 12 C 0.11 4.25 6.16 86.61 0.53 4.78 16 13 C -0.12 -3.10 5.71 30.35 0.17 -2.93 16 14 C -0.11 -2.94 5.51 29.76 0.16 -2.77 16 15 C -0.14 -3.66 4.84 28.61 0.14 -3.52 16 16 C 0.08 2.63 3.74 29.39 0.11 2.74 16 17 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 18 F -0.22 -7.42 17.04 44.97 0.77 -6.66 16 19 C 0.11 4.12 4.90 87.37 0.43 4.55 16 20 H 0.27 15.25 8.29 -92.71 -0.77 14.49 16 21 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.05 2.16 6.91 -2.39 -0.02 2.14 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.08 1.83 7.32 -2.39 -0.02 1.82 16 25 H 0.03 1.21 7.49 -2.39 -0.02 1.19 16 26 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.99 7.36 -2.39 -0.02 1.98 16 29 H 0.08 3.04 5.82 -2.39 -0.01 3.03 16 30 H 0.09 2.79 8.06 -2.39 -0.02 2.77 16 Total: -1.00 -72.71 246.78 5.17 -67.54 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.14 Total: 12.66 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 2.88 Total: 4.90 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -1.58 Total: -79.86 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.06 Total: -41.96 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.77 Total: -6.66 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -72.71 5.17 -67.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307731544.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.600 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds