Wall clock time and date at job start Mon Mar 30 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47373 * 2 1 4 4 C 1.50707 * 109.47279 * 240.00181 * 2 1 3 5 5 H 1.07994 * 120.00296 * 239.99767 * 4 2 1 6 6 C 1.37878 * 119.99690 * 59.99811 * 4 2 1 7 7 N 1.31520 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47418 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47094 * 120.00172 * 8 6 4 11 11 H 1.48503 * 109.47115 * 240.00180 * 8 6 4 12 12 N 1.46898 * 109.47547 * 120.00226 * 2 1 3 13 13 C 1.46899 * 111.00346 * 275.00351 * 12 2 1 14 14 H 1.09000 * 109.45084 * 34.76180 * 13 12 2 15 15 C 1.55153 * 109.59895 * 274.53451 * 13 12 2 16 16 S 1.84215 * 100.95988 * 198.68716 * 15 13 12 17 17 C 1.83400 * 95.77314 * 35.25085 * 16 15 13 18 18 C 1.52930 * 109.60891 * 154.99676 * 13 12 2 19 19 H 1.09000 * 108.88998 * 29.23654 * 18 13 12 20 20 C 1.53001 * 108.88857 * 270.82510 * 18 13 12 21 21 H 1.09001 * 109.46661 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46774 * 299.99640 * 1 2 3 23 23 H 1.08992 * 109.47120 * 59.99603 * 1 2 3 24 24 H 0.96999 * 119.99802 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99739 * 38.95227 * 12 2 1 26 26 H 1.08992 * 111.13707 * 316.53780 * 15 13 12 27 27 H 1.09001 * 111.13328 * 80.67521 * 15 13 12 28 28 H 1.09002 * 110.34306 * 221.42530 * 17 16 15 29 29 H 1.09000 * 110.33922 * 99.27726 * 17 16 15 30 30 H 1.09000 * 109.47151 * 295.56197 * 20 18 13 31 31 H 1.09003 * 109.47118 * 55.56523 * 20 18 13 32 32 H 1.08998 * 109.47560 * 175.56138 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2876 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1466 -0.1871 -4.8165 12 7 2.0198 -0.6925 1.1994 13 6 2.0825 0.2224 2.3469 14 1 1.2600 0.9352 2.2882 15 6 3.4339 0.9846 2.3315 16 16 3.5252 1.5709 4.0755 17 6 2.7289 0.0909 4.8096 18 6 1.9775 -0.5765 3.6467 19 1 2.3916 -1.5715 3.4837 20 6 0.5015 -0.7147 4.0252 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7095 1.1619 -3.4844 25 1 1.4496 -1.4980 1.4099 26 1 4.2610 0.3135 2.1002 27 1 3.4045 1.8226 1.6351 28 1 2.0304 0.3856 5.5927 29 1 3.4836 -0.5855 5.2109 30 1 0.0883 0.2704 4.2421 31 1 -0.0457 -1.1638 3.1963 32 1 0.4102 -1.3490 4.9069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307760723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:51 Heat of formation + Delta-G solvation = -12.655308 kcal Electronic energy + Delta-G solvation = -12968.380386 eV Core-core repulsion = 10861.408321 eV Total energy + Delta-G solvation = -2106.972065 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.89826 -34.60309 -32.09057 -29.78543 -27.71916 -26.54425 -25.16759 -22.81498 -20.06076 -19.73632 -16.76042 -15.98630 -15.44907 -14.66313 -14.14581 -13.87409 -13.71685 -13.07921 -12.71363 -12.31091 -12.17819 -11.67934 -11.55149 -11.29572 -11.11087 -10.95847 -10.78551 -10.47460 -10.40682 -10.16024 -9.91347 -9.68725 -9.00443 -8.39789 -7.50448 -7.38066 -6.01919 -4.05437 2.12478 2.58394 3.29648 3.37707 3.42624 4.40640 4.73608 4.78264 5.01779 5.18670 5.29958 5.53599 5.56014 5.61171 5.64167 5.80355 6.00301 6.08720 6.18860 6.27593 6.43866 6.63953 6.77733 7.04420 7.29407 7.69284 7.84103 8.21341 8.43816 8.53973 9.01973 9.60222 11.05156 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046276 B = 0.007657 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.923148 B = 3655.773334 C = 3880.844563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.674 5.674 13 C 0.089 3.911 14 H 0.054 0.946 15 C -0.038 4.038 16 S -0.327 6.327 17 C -0.057 4.057 18 C -0.104 4.104 19 H 0.086 0.914 20 C -0.144 4.144 21 H 0.027 0.973 22 H 0.005 0.995 23 H 0.089 0.911 24 H 0.259 0.741 25 H 0.329 0.671 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 -2.000 11.471 11.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.305 5.305 13 C -0.024 4.024 14 H 0.072 0.928 15 C -0.187 4.187 16 S -0.101 6.101 17 C -0.205 4.205 18 C -0.124 4.124 19 H 0.104 0.896 20 C -0.202 4.202 21 H 0.047 0.953 22 H 0.024 0.976 23 H 0.108 0.892 24 H 0.069 0.931 25 H 0.147 0.853 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.567 -0.789 11.662 11.793 hybrid contribution -1.138 -1.271 -1.195 2.083 sum 0.429 -2.060 10.466 10.676 Atomic orbital electron populations 1.22434 1.00636 0.99188 1.00581 1.19239 0.89656 0.94448 0.86354 0.94754 1.21169 1.30252 1.12484 0.89514 0.91863 1.24955 0.95311 0.95198 0.99082 1.69893 1.37283 1.23149 1.23302 0.86458 0.78511 0.79665 0.82857 1.19741 1.21211 1.21120 1.60906 1.58171 1.08612 1.02826 1.22350 0.95256 0.94490 0.90296 0.92825 1.24457 1.01143 1.02263 0.90843 1.87674 1.81469 1.30713 1.10265 1.23891 1.00945 0.95918 0.99780 1.21737 0.96639 1.00897 0.93161 0.89562 1.21933 0.94894 1.01951 1.01434 0.95341 0.97591 0.89196 0.93083 0.85327 0.88446 0.87971 0.88785 0.89613 0.92384 0.92092 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.92 37.16 0.33 -3.62 16 2 C 0.21 5.10 2.39 -68.86 -0.16 4.93 16 3 H 0.03 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.50 -13.37 8.84 -34.44 -0.30 -13.68 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.67 -13.47 5.99 -99.80 -0.60 -14.07 16 13 C 0.09 1.52 2.13 -66.61 -0.14 1.38 16 14 H 0.05 1.01 6.80 -51.93 -0.35 0.65 16 15 C -0.04 -0.66 6.90 38.30 0.26 -0.40 16 16 S -0.33 -5.08 23.24 -107.50 -2.50 -7.58 16 17 C -0.06 -0.72 6.99 37.52 0.26 -0.45 16 18 C -0.10 -1.43 2.58 -90.29 -0.23 -1.66 16 19 H 0.09 1.17 7.95 -51.93 -0.41 0.76 16 20 C -0.14 -1.75 8.65 37.16 0.32 -1.43 16 21 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 22 H 0.01 0.11 7.43 -51.93 -0.39 -0.28 16 23 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.33 6.21 7.88 -39.29 -0.31 5.91 16 26 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 27 H 0.10 1.86 8.03 -51.93 -0.42 1.44 16 28 H 0.09 1.05 7.64 -51.93 -0.40 0.66 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.79 7.97 -51.93 -0.41 0.38 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 268.27 15.07 4.04 4.04 Total: -1.00 -27.48 268.27 -8.26 -35.74 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.05 Total: 3.84 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 0.24 Total: -13.51 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.03 Total: -38.77 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -2.50 Total: -7.58 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.48 -8.26 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307760723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.086 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds