Wall clock time and date at job start Mon Mar 30 2020 03:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47373 * 2 1 4 4 C 1.50707 * 109.47279 * 240.00181 * 2 1 3 5 5 H 1.07994 * 120.00296 * 239.99767 * 4 2 1 6 6 C 1.37878 * 119.99690 * 59.99811 * 4 2 1 7 7 N 1.31520 * 120.00125 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47418 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47094 * 120.00172 * 8 6 4 11 11 H 1.48503 * 109.47115 * 240.00180 * 8 6 4 12 12 N 1.46898 * 109.47547 * 120.00226 * 2 1 3 13 13 C 1.46899 * 111.00346 * 275.00351 * 12 2 1 14 14 H 1.09000 * 109.45084 * 34.76180 * 13 12 2 15 15 C 1.55153 * 109.59895 * 274.53451 * 13 12 2 16 16 S 1.84215 * 100.95988 * 198.68716 * 15 13 12 17 17 C 1.83400 * 95.77314 * 35.25085 * 16 15 13 18 18 C 1.52930 * 109.60891 * 154.99676 * 13 12 2 19 19 H 1.09000 * 108.88998 * 29.23654 * 18 13 12 20 20 C 1.53001 * 108.88857 * 270.82510 * 18 13 12 21 21 H 1.09001 * 109.46661 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46774 * 299.99640 * 1 2 3 23 23 H 1.08992 * 109.47120 * 59.99603 * 1 2 3 24 24 H 0.96999 * 119.99802 * 179.97438 * 7 6 4 25 25 H 1.00904 * 110.99739 * 38.95227 * 12 2 1 26 26 H 1.08992 * 111.13707 * 316.53780 * 15 13 12 27 27 H 1.09001 * 111.13328 * 80.67521 * 15 13 12 28 28 H 1.09002 * 110.34306 * 221.42530 * 17 16 15 29 29 H 1.09000 * 110.33922 * 99.27726 * 17 16 15 30 30 H 1.09000 * 109.47151 * 295.56197 * 20 18 13 31 31 H 1.09003 * 109.47118 * 55.56523 * 20 18 13 32 32 H 1.08998 * 109.47560 * 175.56138 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2876 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1466 -0.1871 -4.8165 12 7 2.0198 -0.6925 1.1994 13 6 2.0825 0.2224 2.3469 14 1 1.2600 0.9352 2.2882 15 6 3.4339 0.9846 2.3315 16 16 3.5252 1.5709 4.0755 17 6 2.7289 0.0909 4.8096 18 6 1.9775 -0.5765 3.6467 19 1 2.3916 -1.5715 3.4837 20 6 0.5015 -0.7147 4.0252 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 0.7095 1.1619 -3.4844 25 1 1.4496 -1.4980 1.4099 26 1 4.2610 0.3135 2.1002 27 1 3.4045 1.8226 1.6351 28 1 2.0304 0.3856 5.5927 29 1 3.4836 -0.5855 5.2109 30 1 0.0883 0.2704 4.2421 31 1 -0.0457 -1.1638 3.1963 32 1 0.4102 -1.3490 4.9069 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307760723.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:51 Heat of formation + Delta-G solvation = -29.268655 kcal Electronic energy + Delta-G solvation = -12969.100795 eV Core-core repulsion = 10861.408321 eV Total energy + Delta-G solvation = -2107.692474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31696 -36.28582 -33.90761 -31.29192 -29.19477 -27.79783 -27.21528 -24.20501 -21.87780 -21.02916 -18.46426 -17.62116 -16.95490 -16.41336 -15.45553 -15.35096 -15.06022 -14.59797 -14.22452 -13.85211 -13.62333 -13.25408 -12.92795 -12.86209 -12.67506 -12.63904 -12.30732 -12.14578 -12.05735 -11.76112 -11.56940 -11.11285 -10.83456 -10.49259 -9.06490 -8.73836 -8.10230 -6.21034 0.90382 1.36295 1.41695 1.44137 1.55763 2.43816 3.18780 3.44780 3.62238 3.87516 3.93993 4.20166 4.30811 4.50447 4.65382 4.66745 4.72946 4.78126 4.84876 4.89772 5.05709 5.08647 5.14554 5.28783 5.44664 5.69363 5.82581 6.26380 6.60219 6.78941 6.94079 7.49097 8.95583 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046276 B = 0.007657 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.923148 B = 3655.773334 C = 3880.844563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.218 3.782 3 H 0.001 0.999 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.284 1.284 12 N -0.673 5.673 13 C 0.091 3.909 14 H 0.036 0.964 15 C -0.040 4.040 16 S -0.342 6.342 17 C -0.044 4.044 18 C -0.098 4.098 19 H 0.093 0.907 20 C -0.140 4.140 21 H 0.034 0.966 22 H 0.023 0.977 23 H 0.060 0.940 24 H 0.260 0.740 25 H 0.337 0.663 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -3.290 12.827 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.109 3.891 3 H 0.019 0.981 4 C -0.551 4.551 5 H 0.075 0.925 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.210 1.210 12 N -0.304 5.304 13 C -0.021 4.021 14 H 0.054 0.946 15 C -0.189 4.189 16 S -0.116 6.116 17 C -0.192 4.192 18 C -0.118 4.118 19 H 0.111 0.889 20 C -0.198 4.198 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.156 0.844 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.578 -2.087 13.038 13.298 hybrid contribution -1.132 -0.847 -1.550 2.098 sum 0.446 -2.934 11.488 11.865 Atomic orbital electron populations 1.22233 0.99971 0.99328 0.99976 1.18950 0.89996 0.92663 0.87483 0.98113 1.21471 1.30250 1.12425 0.90918 0.92513 1.25711 0.95514 0.95872 1.01915 1.70021 1.38146 1.24284 1.23886 0.85489 0.78041 0.78621 0.79346 1.19184 1.20662 1.20999 1.60734 1.57886 1.09067 1.02750 1.22399 0.94502 0.94059 0.91187 0.94582 1.24295 1.01071 1.01510 0.92053 1.87735 1.82137 1.32951 1.08825 1.24039 1.01463 0.94312 0.99416 1.21648 0.98201 1.00399 0.91561 0.88882 1.21918 0.93237 1.02423 1.02256 0.94665 0.95769 0.92126 0.93072 0.84421 0.88918 0.90149 0.86548 0.87478 0.92580 0.93152 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.31 8.92 71.98 0.64 -6.67 16 2 C 0.22 10.71 2.39 44.17 0.11 10.82 16 3 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 4 C -0.51 -27.90 8.84 25.60 0.23 -27.67 16 5 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.76 16 8 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 N -0.67 -26.73 5.99 -469.65 -2.81 -29.54 16 13 C 0.09 3.07 2.13 45.63 0.10 3.16 16 14 H 0.04 1.35 6.80 -2.39 -0.02 1.34 16 15 C -0.04 -1.40 6.90 72.72 0.50 -0.90 16 16 S -0.34 -10.19 23.24 -56.49 -1.31 -11.50 16 17 C -0.04 -0.97 6.99 72.22 0.50 -0.46 16 18 C -0.10 -2.43 2.58 -10.58 -0.03 -2.46 16 19 H 0.09 2.24 7.95 -2.39 -0.02 2.22 16 20 C -0.14 -2.99 8.65 71.98 0.62 -2.36 16 21 H 0.03 1.55 8.13 -2.39 -0.02 1.54 16 22 H 0.02 1.00 7.43 -2.39 -0.02 0.98 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 24 H 0.26 14.24 8.31 -92.71 -0.77 13.46 16 25 H 0.34 12.37 7.88 -89.69 -0.71 11.66 16 26 H 0.09 3.24 8.14 -2.39 -0.02 3.23 16 27 H 0.08 3.08 8.03 -2.39 -0.02 3.06 16 28 H 0.12 2.10 7.64 -2.39 -0.02 2.08 16 29 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.18 7.97 -2.39 -0.02 1.17 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -58.90 268.27 1.65 -57.25 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.38 Total: 16.48 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.12 Total: -25.66 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -2.57 Total: -82.30 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -10.19 SS G_CDS: -1.31 Total: -11.50 kcal Total: -58.90 1.65 -57.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307760723.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.985 kcal (2) G-P(sol) polarization free energy of solvation -58.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds