Wall clock time and date at job start Mon Mar 30 2020 03:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 N 1.46502 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99546 * 90.00442 * 4 3 2 6 6 H 1.08001 * 119.99500 * 220.09822 * 5 4 3 7 7 C 1.38812 * 120.00194 * 40.10243 * 5 4 3 8 8 N 1.31620 * 120.00051 * 200.14112 * 7 5 4 9 9 Si 1.86802 * 120.00084 * 20.13861 * 7 5 4 10 10 H 1.48499 * 109.46857 * 264.72153 * 9 7 5 11 11 H 1.48500 * 109.47049 * 144.71973 * 9 7 5 12 12 H 1.48502 * 109.46889 * 24.72167 * 9 7 5 13 13 C 1.46493 * 119.99966 * 270.00349 * 4 3 2 14 14 H 1.09003 * 108.83397 * 357.41776 * 13 4 3 15 15 C 1.52341 * 108.86785 * 238.88948 * 13 4 3 16 16 C 1.54263 * 112.58939 * 239.18595 * 15 13 4 17 17 S 1.83953 * 102.58039 * 24.52390 * 16 15 13 18 18 C 1.54259 * 108.86797 * 115.95377 * 13 4 3 19 19 H 1.09005 * 109.46814 * 299.99967 * 1 2 3 20 20 H 1.09001 * 109.46447 * 59.99591 * 1 2 3 21 21 H 1.08991 * 109.46804 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46814 * 240.00033 * 2 1 3 23 23 H 1.08996 * 109.47108 * 120.00631 * 2 1 3 24 24 H 1.08999 * 109.46774 * 60.00167 * 3 2 1 25 25 H 1.08996 * 109.47055 * 300.00226 * 3 2 1 26 26 H 0.96998 * 119.99962 * 180.02562 * 8 7 5 27 27 H 1.09007 * 108.86432 * 359.97438 * 15 13 4 28 28 H 1.09000 * 108.86968 * 118.50385 * 15 13 4 29 29 H 1.08997 * 110.78641 * 142.80177 * 16 15 13 30 30 H 1.08996 * 110.78299 * 266.25663 * 16 15 13 31 31 H 1.09004 * 110.78571 * 214.55761 * 18 13 4 32 32 H 1.08996 * 110.78957 * 338.01480 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.4423 -1.1851 6 1 5.0798 0.8398 -1.2946 7 6 3.7414 2.2166 -2.2461 8 7 4.1277 1.9387 -3.4733 9 14 2.5890 3.6530 -1.9324 10 1 1.1845 3.2128 -2.1292 11 1 2.9003 4.7533 -2.8798 12 1 2.7663 4.1345 -0.5389 13 6 4.2370 1.4425 1.2696 14 1 3.5201 1.4891 2.0893 15 6 5.1285 2.6767 1.3241 16 6 6.6217 2.3226 1.4811 17 16 6.7053 0.6214 0.7864 18 6 5.0396 0.1300 1.3827 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3632 -1.0276 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6768 1.9563 0.8900 25 1 1.6768 1.9563 -0.8899 26 1 3.8143 2.4800 -4.2147 27 1 4.9967 3.2475 0.4048 28 1 4.8240 3.2944 2.1690 29 1 7.2441 3.0070 0.9046 30 1 6.9116 2.3261 2.5318 31 1 5.0845 -0.2080 2.4180 32 1 4.6129 -0.6409 0.7411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307971121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:20 Heat of formation + Delta-G solvation = 17.083859 kcal Electronic energy + Delta-G solvation = -13389.641767 eV Core-core repulsion = 11283.959289 eV Total energy + Delta-G solvation = -2105.682478 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.41284 -34.07628 -32.25485 -30.64350 -28.47952 -25.57800 -24.66351 -22.39564 -20.87156 -19.16635 -16.60866 -15.88603 -15.45542 -14.99428 -14.06431 -13.62487 -13.56995 -13.06672 -12.91896 -12.32281 -12.08191 -11.59296 -11.43469 -11.24545 -11.03180 -10.87922 -10.79881 -10.45011 -10.18361 -10.05272 -9.63360 -9.49716 -9.17911 -8.46485 -7.12725 -6.51553 -5.88379 -3.36721 2.60408 3.03127 3.32211 3.47722 3.50401 4.56219 4.83788 5.20452 5.37995 5.54377 5.64082 5.66926 5.72821 5.80972 5.89054 6.00533 6.04988 6.13434 6.16675 6.35639 6.39005 6.48926 6.52802 6.70891 6.89679 6.99002 7.07599 8.14092 8.56502 9.10167 9.79343 10.16454 11.24819 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.014615 C = 0.011427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.309266 B = 1915.345676 C = 2449.825260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.137 3.863 4 N -0.601 5.601 5 C -0.260 4.260 6 H 0.100 0.900 7 C 0.038 3.962 8 N -0.900 5.900 9 Si 0.869 3.131 10 H -0.288 1.288 11 H -0.304 1.304 12 H -0.271 1.271 13 C 0.171 3.829 14 H 0.060 0.940 15 C -0.135 4.135 16 C -0.060 4.060 17 S -0.296 6.296 18 C -0.070 4.070 19 H 0.045 0.955 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.261 0.739 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -0.450 10.614 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.012 3.988 4 N -0.322 5.322 5 C -0.388 4.388 6 H 0.118 0.882 7 C -0.162 4.162 8 N -0.542 5.542 9 Si 0.700 3.300 10 H -0.216 1.216 11 H -0.232 1.232 12 H -0.196 1.196 13 C 0.062 3.938 14 H 0.078 0.922 15 C -0.175 4.175 16 C -0.208 4.208 17 S -0.070 6.070 18 C -0.221 4.221 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.087 -0.982 9.788 9.897 hybrid contribution -1.585 1.502 0.608 2.267 sum -2.672 0.519 10.396 10.746 Atomic orbital electron populations 1.21750 0.97416 1.00580 1.00993 1.22052 0.93729 1.00213 1.01890 1.21246 0.84381 0.94250 0.98936 1.44436 0.99960 1.86102 1.01710 1.19097 1.11068 1.21999 0.86684 0.88228 1.25554 0.97677 0.97437 0.95535 1.69842 1.46707 1.39410 0.98194 0.87057 0.80589 0.84594 0.77751 1.21599 1.23216 1.19611 1.20851 0.93351 0.90008 0.89573 0.92197 1.22511 0.91729 0.99924 1.03358 1.23962 1.00023 0.95330 1.01525 1.87632 1.25274 1.16780 1.77334 1.24697 0.93356 1.02511 1.01512 0.93607 0.93158 0.93532 0.91325 0.93169 0.94740 0.92851 0.92916 0.88744 0.92646 0.88827 0.90792 0.91120 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.55 6.26 -26.73 -0.17 -2.71 16 3 C 0.14 2.85 4.45 -4.04 -0.02 2.83 16 4 N -0.60 -13.40 1.77 -165.30 -0.29 -13.69 16 5 C -0.26 -6.91 8.14 -15.06 -0.12 -7.03 16 6 H 0.10 2.92 6.58 -52.49 -0.35 2.57 16 7 C 0.04 1.07 5.33 -17.43 -0.09 0.98 16 8 N -0.90 -27.33 13.97 55.49 0.78 -26.55 16 9 Si 0.87 21.84 25.01 -169.99 -4.25 17.59 16 10 H -0.29 -7.11 6.70 56.52 0.38 -6.73 16 11 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.17 3.22 3.14 -67.61 -0.21 3.00 16 14 H 0.06 1.01 7.74 -51.93 -0.40 0.60 16 15 C -0.14 -2.44 5.79 -26.41 -0.15 -2.60 16 16 C -0.06 -0.99 7.46 37.82 0.28 -0.71 16 17 S -0.30 -5.74 21.62 -107.50 -2.32 -8.06 16 18 C -0.07 -1.26 6.66 37.82 0.25 -1.01 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.03 0.65 7.88 -51.93 -0.41 0.24 16 25 H 0.05 1.24 3.44 -51.93 -0.18 1.06 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.09 2.04 7.09 -51.92 -0.37 1.67 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.11 2.06 8.01 -51.93 -0.42 1.64 16 LS Contribution 262.74 15.07 3.96 3.96 Total: -1.00 -29.23 262.74 -7.08 -36.30 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.08 Total: -0.36 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 0.14 Total: -9.18 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.48 Total: -40.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.25 Total: 17.59 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -2.32 Total: -8.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.23 -7.08 -36.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307971121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.389 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds