Wall clock time and date at job start Mon Mar 30 2020 03:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47276 * 2 1 4 4 N 1.46502 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.36938 * 119.99546 * 90.00442 * 4 3 2 6 6 H 1.08001 * 119.99500 * 220.09822 * 5 4 3 7 7 C 1.38812 * 120.00194 * 40.10243 * 5 4 3 8 8 N 1.31620 * 120.00051 * 200.14112 * 7 5 4 9 9 Si 1.86802 * 120.00084 * 20.13861 * 7 5 4 10 10 H 1.48499 * 109.46857 * 264.72153 * 9 7 5 11 11 H 1.48500 * 109.47049 * 144.71973 * 9 7 5 12 12 H 1.48502 * 109.46889 * 24.72167 * 9 7 5 13 13 C 1.46493 * 119.99966 * 270.00349 * 4 3 2 14 14 H 1.09003 * 108.83397 * 357.41776 * 13 4 3 15 15 C 1.52341 * 108.86785 * 238.88948 * 13 4 3 16 16 C 1.54263 * 112.58939 * 239.18595 * 15 13 4 17 17 S 1.83953 * 102.58039 * 24.52390 * 16 15 13 18 18 C 1.54259 * 108.86797 * 115.95377 * 13 4 3 19 19 H 1.09005 * 109.46814 * 299.99967 * 1 2 3 20 20 H 1.09001 * 109.46447 * 59.99591 * 1 2 3 21 21 H 1.08991 * 109.46804 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46814 * 240.00033 * 2 1 3 23 23 H 1.08996 * 109.47108 * 120.00631 * 2 1 3 24 24 H 1.08999 * 109.46774 * 60.00167 * 3 2 1 25 25 H 1.08996 * 109.47055 * 300.00226 * 3 2 1 26 26 H 0.96998 * 119.99962 * 180.02562 * 8 7 5 27 27 H 1.09007 * 108.86432 * 359.97438 * 15 13 4 28 28 H 1.09000 * 108.86968 * 118.50385 * 15 13 4 29 29 H 1.08997 * 110.78641 * 142.80177 * 16 15 13 30 30 H 1.08996 * 110.78299 * 266.25663 * 16 15 13 31 31 H 1.09004 * 110.78571 * 214.55761 * 18 13 4 32 32 H 1.08996 * 110.78957 * 338.01480 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1902 1.4423 -1.1851 6 1 5.0798 0.8398 -1.2946 7 6 3.7414 2.2166 -2.2461 8 7 4.1277 1.9387 -3.4733 9 14 2.5890 3.6530 -1.9324 10 1 1.1845 3.2128 -2.1292 11 1 2.9003 4.7533 -2.8798 12 1 2.7663 4.1345 -0.5389 13 6 4.2370 1.4425 1.2696 14 1 3.5201 1.4891 2.0893 15 6 5.1285 2.6767 1.3241 16 6 6.6217 2.3226 1.4811 17 16 6.7053 0.6214 0.7864 18 6 5.0396 0.1300 1.3827 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5139 -0.8900 21 1 -0.3632 -1.0276 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6768 1.9563 0.8900 25 1 1.6768 1.9563 -0.8899 26 1 3.8143 2.4800 -4.2147 27 1 4.9967 3.2475 0.4048 28 1 4.8240 3.2944 2.1690 29 1 7.2441 3.0070 0.9046 30 1 6.9116 2.3261 2.5318 31 1 5.0845 -0.2080 2.4180 32 1 4.6129 -0.6409 0.7411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307971121.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:19 Heat of formation + Delta-G solvation = -0.332790 kcal Electronic energy + Delta-G solvation = -13390.397009 eV Core-core repulsion = 11283.959289 eV Total energy + Delta-G solvation = -2106.437721 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.05432 -35.55443 -34.16922 -32.31511 -29.96702 -27.30651 -26.19897 -24.05034 -22.38726 -20.80363 -18.42764 -17.54605 -17.11386 -16.73467 -15.67820 -15.12679 -15.00330 -14.80774 -14.36978 -14.04327 -13.82077 -13.08231 -12.92712 -12.75358 -12.63900 -12.56733 -12.28977 -12.06086 -11.74200 -11.58968 -11.56185 -11.23538 -10.63291 -10.53630 -8.85426 -8.25591 -7.97956 -5.47834 1.18789 1.31981 1.41766 1.51233 1.63444 2.49466 3.14409 3.31304 3.88493 4.17883 4.20311 4.31977 4.32771 4.44592 4.51724 4.59304 4.70059 4.73394 4.77802 4.87487 4.98512 5.10256 5.20657 5.27086 5.42689 5.48009 5.57636 6.08704 6.50277 7.11875 7.75973 8.15202 9.13852 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.014615 C = 0.011427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.309266 B = 1915.345676 C = 2449.825260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.129 3.871 4 N -0.611 5.611 5 C -0.225 4.225 6 H 0.064 0.936 7 C -0.025 4.025 8 N -0.957 5.957 9 Si 0.932 3.068 10 H -0.283 1.283 11 H -0.321 1.321 12 H -0.252 1.252 13 C 0.164 3.836 14 H 0.097 0.903 15 C -0.135 4.135 16 C -0.040 4.040 17 S -0.370 6.370 18 C -0.052 4.052 19 H 0.069 0.931 20 H 0.037 0.963 21 H 0.063 0.937 22 H 0.031 0.969 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.027 0.973 26 H 0.256 0.744 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 0.130 14.047 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.005 3.995 4 N -0.333 5.333 5 C -0.356 4.356 6 H 0.081 0.919 7 C -0.220 4.220 8 N -0.603 5.603 9 Si 0.762 3.238 10 H -0.211 1.211 11 H -0.250 1.250 12 H -0.176 1.176 13 C 0.057 3.943 14 H 0.115 0.885 15 C -0.175 4.175 16 C -0.188 4.188 17 S -0.145 6.145 18 C -0.202 4.202 19 H 0.088 0.912 20 H 0.056 0.944 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.434 -0.407 13.282 13.510 hybrid contribution -1.120 1.233 -0.359 1.704 sum -3.555 0.826 12.923 13.428 Atomic orbital electron populations 1.21704 0.94879 1.02023 1.01576 1.21922 0.95929 0.98316 1.00936 1.21374 0.83258 0.95749 0.99116 1.44543 1.00851 1.86253 1.01680 1.18852 1.09203 1.19364 0.88148 0.91851 1.26106 1.00379 1.00184 0.95291 1.69992 1.50039 1.41064 0.99213 0.86028 0.78863 0.80994 0.77890 1.21076 1.25030 1.17589 1.21158 0.94112 0.90497 0.88577 0.88510 1.22474 0.92606 0.99475 1.02926 1.24046 0.99236 0.92157 1.03360 1.87964 1.27397 1.20309 1.78872 1.24645 0.91093 1.01505 1.02948 0.91210 0.94352 0.91760 0.95021 0.91380 0.91475 0.95506 0.93526 0.92661 0.88860 0.89012 0.86909 0.87246 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.13 -4.53 6.26 30.60 0.19 -4.33 16 3 C 0.13 5.04 4.45 86.38 0.38 5.42 16 4 N -0.61 -26.23 1.77 -676.88 -1.20 -27.43 16 5 C -0.23 -12.17 8.14 84.03 0.68 -11.49 16 6 H 0.06 3.87 6.58 -2.91 -0.02 3.85 16 7 C -0.02 -1.44 5.33 84.86 0.45 -0.99 16 8 N -0.96 -60.82 13.97 21.65 0.30 -60.51 16 9 Si 0.93 45.90 25.01 68.60 1.72 47.61 16 10 H -0.28 -13.52 6.70 99.48 0.67 -12.85 16 11 H -0.32 -16.49 7.11 99.48 0.71 -15.78 16 12 H -0.25 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.16 5.59 3.14 45.20 0.14 5.73 16 14 H 0.10 2.66 7.74 -2.39 -0.02 2.64 16 15 C -0.13 -4.41 5.79 30.80 0.18 -4.23 16 16 C -0.04 -1.21 7.46 72.41 0.54 -0.67 16 17 S -0.37 -14.13 21.62 -56.49 -1.22 -15.35 16 18 C -0.05 -1.74 6.66 72.41 0.48 -1.25 16 19 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 20 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.07 2.19 7.88 -2.39 -0.02 2.17 16 25 H 0.03 1.20 3.44 -2.39 -0.01 1.19 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.05 2.28 7.09 -2.38 -0.02 2.26 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 32 H 0.08 3.14 8.01 -2.39 -0.02 3.12 16 Total: -1.00 -66.35 262.74 4.40 -61.95 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.03 Total: 8.81 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 3.77 Total: -15.08 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -0.90 Total: -87.94 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.72 Total: 47.61 kcal Atomic # 16 Polarization: -14.13 SS G_CDS: -1.22 Total: -15.35 kcal Total: -66.35 4.40 -61.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307971121.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.618 kcal (2) G-P(sol) polarization free energy of solvation -66.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds