Wall clock time and date at job start Mon Mar 30 2020 02:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00147 * 2 1 4 4 H 1.48504 * 109.46900 * 240.00130 * 3 2 1 5 5 H 1.48499 * 109.46891 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47339 * 120.00359 * 3 2 1 7 7 C 1.37880 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00107 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47103 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46859 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99919 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99798 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00162 * 180.02562 * 12 11 10 15 15 F 1.39905 * 112.84834 * 319.66319 * 14 12 11 16 16 C 1.53781 * 113.69450 * 90.93091 * 14 12 11 17 17 C 1.53777 * 87.07977 * 89.12715 * 16 14 12 18 18 C 1.53780 * 87.08217 * 25.43602 * 17 16 14 19 19 H 0.96997 * 119.99814 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47666 * 59.99585 * 9 7 2 21 21 H 1.09003 * 109.46901 * 300.00113 * 9 7 2 22 22 H 1.09003 * 109.47499 * 59.99895 * 10 9 7 23 23 H 1.08996 * 109.46961 * 299.99046 * 10 9 7 24 24 H 0.96998 * 119.99913 * 359.97438 * 11 10 9 25 25 H 1.08993 * 113.61733 * 203.67828 * 16 14 12 26 26 H 1.09001 * 113.61258 * 334.58573 * 16 14 12 27 27 H 1.09001 * 113.62025 * 270.88491 * 17 16 14 28 28 H 1.09000 * 113.69328 * 139.99289 * 17 16 14 29 29 H 1.09008 * 113.61430 * 220.02104 * 18 17 16 30 30 H 1.08997 * 113.69385 * 89.12846 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 6 2.1865 -6.0980 -0.0024 13 8 3.3994 -6.0980 -0.0028 14 6 1.4330 -7.4031 -0.0035 15 9 0.3100 -7.3827 0.8305 16 6 1.1445 -7.9489 -1.4119 17 6 2.4997 -8.6703 -1.3245 18 6 2.3318 -8.6336 0.2037 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5564 -0.8919 21 1 0.6240 -2.5575 0.8880 22 1 2.8713 -3.6048 0.8890 23 1 2.8724 -3.6040 -0.8910 24 1 0.5427 -4.9308 -0.0020 25 1 0.2912 -8.6259 -1.4515 26 1 1.1097 -7.1769 -2.1807 27 1 3.3366 -8.0730 -1.6863 28 1 2.4874 -9.6775 -1.7410 29 1 3.2556 -8.4143 0.7393 30 1 1.8035 -9.4974 0.6071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308398961.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:12 Heat of formation + Delta-G solvation = -81.070518 kcal Electronic energy + Delta-G solvation = -14249.765284 eV Core-core repulsion = 11573.613337 eV Total energy + Delta-G solvation = -2676.151947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.75932 -39.86947 -37.20382 -34.89350 -32.88230 -29.85938 -26.39913 -26.02237 -24.42317 -21.80191 -20.87517 -19.21544 -17.66043 -16.50285 -16.27556 -15.62542 -14.94674 -14.80744 -14.53644 -14.40102 -13.83795 -13.08801 -12.97678 -12.59319 -12.31212 -11.61322 -11.36280 -11.25410 -11.17790 -11.03724 -10.68705 -10.45332 -10.36929 -9.85888 -9.49372 -9.23171 -8.63811 -8.40842 -6.10766 -4.14290 2.63147 3.29631 3.30285 3.34456 3.39275 4.10715 4.14427 4.39297 4.52537 4.61968 4.74778 5.26121 5.39072 5.41456 5.50454 5.69219 5.77916 5.83813 6.15833 6.27236 6.28648 6.65702 6.77088 7.47472 7.57901 7.83104 7.87508 8.22641 8.41993 8.91186 9.50649 11.00793 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.065201 B = 0.005673 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.337076 B = 4934.136629 C = 5133.562009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.708 5.708 12 C 0.511 3.489 13 O -0.532 6.532 14 C 0.066 3.934 15 F -0.192 7.192 16 C -0.145 4.145 17 C -0.136 4.136 18 C -0.138 4.138 19 H 0.263 0.737 20 H 0.023 0.977 21 H 0.024 0.976 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.402 0.598 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -15.441 -1.913 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.357 5.357 12 C 0.294 3.706 13 O -0.409 6.409 14 C 0.045 3.955 15 F -0.172 7.172 16 C -0.183 4.183 17 C -0.173 4.173 18 C -0.176 4.176 19 H 0.073 0.927 20 H 0.042 0.958 21 H 0.042 0.958 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.237 0.763 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.547 -15.267 -1.887 15.460 hybrid contribution -0.288 1.013 0.131 1.061 sum 1.259 -14.254 -1.755 14.416 Atomic orbital electron populations 1.69944 1.06112 1.27054 1.50102 1.24996 0.94894 0.99424 0.94900 0.86556 0.79509 0.82592 0.78784 1.20100 1.21201 1.20085 1.20994 0.93197 0.90330 1.51740 0.92265 1.19333 0.94181 0.91000 0.98024 1.21831 0.96166 0.81173 1.01028 1.46332 1.11029 1.06359 1.72016 1.19982 0.88038 0.84799 0.77799 1.90694 1.13042 1.87044 1.50149 1.22740 0.84772 0.95710 0.92294 1.92871 1.53282 1.97538 1.73518 1.23528 0.99684 1.00789 0.94338 1.22728 0.97351 1.01524 0.95689 1.23410 1.00419 0.95422 0.98338 0.92729 0.95838 0.95798 0.92251 0.92218 0.76341 0.87930 0.89768 0.88764 0.90181 0.89016 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.56 5.61 -4.04 -0.02 2.54 16 11 N -0.71 -12.90 5.53 -60.29 -0.33 -13.23 16 12 C 0.51 8.89 7.01 -10.99 -0.08 8.82 16 13 O -0.53 -10.62 15.46 5.55 0.09 -10.54 16 14 C 0.07 0.91 2.13 -90.96 -0.19 0.72 16 15 F -0.19 -2.79 17.06 2.25 0.04 -2.75 16 16 C -0.15 -1.57 7.56 -25.92 -0.20 -1.77 16 17 C -0.14 -1.39 7.70 -25.92 -0.20 -1.59 16 18 C -0.14 -1.58 7.32 -25.92 -0.19 -1.77 16 19 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 20 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.40 6.68 8.32 -40.82 -0.34 6.34 16 25 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 27 H 0.09 1.11 7.77 -51.93 -0.40 0.71 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.15 7.56 -51.92 -0.39 0.76 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 263.98 15.07 3.98 3.98 Total: -1.00 -30.44 263.98 -6.00 -36.44 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.06 Total: 1.38 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.43 Total: -6.17 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.40 Total: -38.67 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.44 -6.00 -36.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308398961.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.627 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds